Dear NEURON Developers,
We are exploring the effect of reduced gravity on the physiology and electrophysiology of neurons.
Is RXD able to consider this parameter in the dynamic equations?
Thank you in advance for any help.
Best regards,
Sergio Solinas
Search found 9 matches
- Tue Jun 20, 2023 4:26 am
- Forum: Reaction-diffusion in NEURON
- Topic: Effects of Gravity on RDX
- Replies: 0
- Views: 26981
- Thu Dec 07, 2017 6:17 am
- Forum: NetPyNE
- Topic: Bug in plasticity option
- Replies: 1
- Views: 16889
Bug in plasticity option
Hello everybody, I was experimenting with the STDP plasticity and I found out it does not work in Netpyne. The problem is simple: to activate the plasticity in the Documentation of "Connectivity Rules" is written: "plasticity (optional) - Plasticity mechanism to use for this connectio...
- Tue Dec 05, 2017 4:05 am
- Forum: NetPyNE
- Topic: Inspect the NEURON object
- Replies: 1
- Views: 17891
Re: Inspect the NEURON object
Hello,
found it!
Thanks anyway!
Sergio
found it!
Code: Select all
(pops, cells, conns, stims, simData) = sim.create(netParams = p['netParams'], simConfig = p['simConfig'], output = True)
Sergio
- Tue Dec 05, 2017 3:51 am
- Forum: NetPyNE
- Topic: Inspect the NEURON object
- Replies: 1
- Views: 17891
Inspect the NEURON object
Hello everybody, I'm having troubles to get a correct import of a NEURON models. It imports fine but when it runs it does not spike as it should. I would like to be able to inspect the actual values of the parameters the NETPYNE sets in the NEURON objects. Is there a way to access the objects/sectio...
- Mon Nov 27, 2017 9:36 am
- Forum: NetPyNE
- Topic: How to set initial voltage of simulation
- Replies: 6
- Views: 28711
Re: How to set initial voltage of simulation
Dear Ted and Salvador, thanks for the quick and clear response. I realise now that my question was addressing a more general issue than simply setting the v_init of a section. As a consequence of this I realise only now that I should have opened a new post rather than posting my question as a follow...
- Thu Nov 23, 2017 5:04 am
- Forum: NetPyNE
- Topic: How to set initial voltage of simulation
- Replies: 6
- Views: 28711
Re: How to set initial voltage of simulation
Hi all, I find it difficult to find how to set the initial voltage for all sections in one cell. In the documentation is explained how to do it for a single section. "e.g. cellRule['secs']['soma']['vinit'] = -72" I could successfully do it this way: goc_cellRule['secLists'] = {'all':[ 'ele...
- Wed Oct 18, 2017 12:28 pm
- Forum: NetPyNE
- Topic: Setup for multiple runs of the same model
- Replies: 3
- Views: 19602
Setup for multiple runs of the same model
Hello Salvador, Hello NetPyners, I'm finally stating to use netpyne for my simulations, wonderful project you made! At the Janelia Farm you told me that it is possible to have in one simulation multiple runs of the same model automatically managing the output data and their analysis. I feel quite &q...
- Wed Nov 21, 2007 11:37 am
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Higher order derivatives in NMODL
- Replies: 3
- Views: 3644
I already wrote the mod file to solve a family of 1st order ODE. Since in the nmodl400.pdf file (pg18) is written that it's possible to write ODE with higher order derivatives I tried to do so, without success. Searching for info i got to the file deriv.c where a long comment shows an example for MO...
- Wed Nov 21, 2007 6:59 am
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Higher order derivatives in NMODL
- Replies: 3
- Views: 3644
Higher order derivatives in NMODL
We're currently trying to implement a second order equation in a mod file. According to the example given inside the deriv.c file (src/nmodl/deriv.c) it should be easy to do so. However, the given example does not compile and it contains old NMODL commands. The article, which so far has been my refe...