Search found 40 matches

by tom_morse
Thu Sep 14, 2017 10:42 am
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 19499

Re: Wang, Buzsaki 1996's model running issue

The model in modeldb has been updated with a vecst.mod file RBett sent. Thanks RBett!
by tom_morse
Wed Sep 13, 2017 11:37 am
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 19499

Re: Wang, Buzsaki 1996's model running issue

Yes it is worth putting in ModelDB. Please email me the code (will send separate email to you) and I will upload it!
by tom_morse
Mon Jul 03, 2017 10:36 am
Forum: ModelDB and other online sources of models
Topic: couldn't find model on modeldb with accession number 151685
Replies: 7
Views: 12029

Re: couldn't find model on modeldb with accession number 151

I am pleased to report that the model has been made available:
Current Dipole in Laminar Neocortex (Lee et al. 2013)
http://modeldb.yale.edu/151685
by tom_morse
Thu Jun 08, 2017 4:06 pm
Forum: ModelDB and other online sources of models
Topic: couldn't find model on modeldb with accession number 151685
Replies: 7
Views: 12029

Re: couldn't find model on modeldb with accession 151685

Shane Lee apologized for the oversight and is looking for the files.
by tom_morse
Sun Jun 04, 2017 9:48 am
Forum: ModelDB and other online sources of models
Topic: couldn't find model on modeldb with accession number 151685
Replies: 7
Views: 12029

Re: couldn't find model on modeldb with accession 151685

Thank you for your post. I will contact the authors and request for them to contribute their model.
by tom_morse
Thu Aug 21, 2014 7:35 pm
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 19499

Re: Wang, Buzsaki 1996's model running issue

I updated the model in modeldb to run on mswin as well as unix/linux. Please download and try this new version:

http://senselab.med.yale.edu/modeldb/Sh ... odel=26997
by tom_morse
Thu Aug 21, 2014 11:10 am
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 19499

Re: Wang, Buzsaki 1996's model running issue

Changing the include file from sys/time.h to just time.h got past this mknrndll error. However there were other errors with the drand48 not being found. I found another model in ModelDB that has some clues about how to convert this to windows from linux: https://senselab.med.yale.edu/modeldb/ShowMod...
by tom_morse
Wed Aug 20, 2014 1:41 pm
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 19499

Re: Wang, Buzsaki 1996's model running issue

Start with the mosinit.hoc file instead if that is OK.

I will help you get the model running if the mosinit.hoc doesn't have the part you would like. 1)Which platform (mswin, mac os x, unix/linux) and which 2) version of NEURON (7.3, alpha, hg) are you using?
by tom_morse
Mon May 06, 2013 11:31 am
Forum: UNIX/Linux
Topic: iv-17 installation problems
Replies: 6
Views: 10601

Re: iv-17 installation problems

On an old 10.04LTS ubuntu I found that installing libkaya-ncurses-dev allowed the ncurses, curses, or termcap error message to go away after installing the other packages mentioned above.
by tom_morse
Fri Mar 08, 2013 2:01 pm
Forum: UNIX/Linux
Topic: nrnivmodl compiling in Linux
Replies: 8
Views: 9920

Re: nrnivmodl compiling in Linux

In ubuntu it is convenient to use synaptic as a package manager. If you don't have it you can add it with a command like sudo apt-get install synaptic When I used synaptic to discover what was missing (I typed ncurses in the synaptic search box when i received the ncurses missing message) I cured th...
by tom_morse
Mon Jan 28, 2013 11:19 am
Forum: Specific models
Topic: Vierling-Claassen et al 2010 model in mswin, network view
Replies: 0
Views: 12734

Vierling-Claassen et al 2010 model in mswin, network view

________________________________________ From: liu kefei [lkefei@ion.ac.cn] Sent: Thursday, January 24, 2013 4:05 AM To: Morse, Thomas Subject: ModelDB: Dear Mr. or Miss I am wrting to ask a question about auto-run. I saw this in your website: Some models can be run directly from the web page. For t...
by tom_morse
Wed Dec 12, 2012 12:37 pm
Forum: General questions and discussions about computational neuroscience
Topic: Can I draw picture in compartment format in NEURON?
Replies: 2
Views: 10433

Re: Can I draw picture in compartment format in NEURON?

I am not sure what you mean by compartment format? If you mean just to display the cell in NEURON, first, import the cell in to NEURON by starting NEURON and using NEURON Main Menu - > Tools -> Miscellaneous -> Import3D Import3d_GUI[0] - choose a file (click checkbox) -> browse and select a swc file...
by tom_morse
Mon Aug 20, 2012 1:13 pm
Forum: Specific models
Topic: Questions about Traub’s model
Replies: 4
Views: 11458

Re: Questions about Traub’s model

Is -66.5425 close enough? I notice that the TCR model soma settles down to that if run for 10 seconds (10000ms). If this is adequate one could examine all the activation and inactivation variables and voltages in each compartment and initialize the model to them to start with a steady state. Note th...
by tom_morse
Sun Aug 19, 2012 11:22 pm
Forum: Specific models
Topic: Questions about Traub’s model
Replies: 4
Views: 11458

Re: Questions about Traub’s model

Regarding your first question on balancing the conductances: Traub set the max conductance values to reproduce electropysiology experiments as seen in the 2005 paper's appendix and previous papers. It is expected that there are ranges of values of max conductances that could also reproduce the exper...