Search found 3 matches

by jdlawson
Mon Apr 24, 2023 8:48 pm
Forum: Anatomically detailed models
Topic: Compartments vs Segments vs Sections
Replies: 8
Views: 15168

Re: Compartments vs Segments vs Sections

Ah ok that makes sense! So circling back to my original question I want to make sure I've got it correct. For the following topology /-- r_1 -- dend[1](0.166667) -- r_2 -- dend[1](0.5) -- r_3 -- dend[1](0.833333) -- ... / ... -- dend[0](0.5) \ \-- r_4 -- dend[2](0.166667) -- r_5 -- dend[2](0.5) -- r...
by jdlawson
Mon Apr 24, 2023 11:55 am
Forum: Anatomically detailed models
Topic: Compartments vs Segments vs Sections
Replies: 8
Views: 15168

Re: Compartments vs Segments vs Sections

Thanks for the replies! As per your suggestion, when I run the following code: from neuron import h soma = h.Section(name='soma') soma.L = 10 soma.diam = 10 soma.nseg = 1 dend = h.Section(name='dend') dend.L = 100 dend.diam = 2 dend.nseg = 1 dend.connect(soma(1.)) axon = h.Section(name='axon') axon....
by jdlawson
Fri Apr 21, 2023 1:16 pm
Forum: Anatomically detailed models
Topic: Compartments vs Segments vs Sections
Replies: 8
Views: 15168

Compartments vs Segments vs Sections

I am attempting to load a model with NEURON and pull out a list of compartments in the simulation along with connectivity information and the resistance between each pair of connected compartments. My understanding is that compartments in NEURON are represented by segments, which are organized into ...