Search found 13 matches

by aliaped
Tue May 10, 2022 5:45 pm
Forum: Modeling networks
Topic: Vector play issue
Replies: 3
Views: 7811

Re: Vector play issue

Ted, this was so excellent. Thank you.
by aliaped
Tue May 10, 2022 10:32 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 5
Views: 10583

Re: GUI bug in netbuilder?

Reinstalling neuron fixed the problem, much appreciated.
by aliaped
Tue May 10, 2022 10:24 am
Forum: Modeling networks
Topic: Vector play issue
Replies: 3
Views: 7811

Vector play issue

Hi there, Many thanks for the work you put into this forum. I am attempting to change synaptic conductance over the course of a train at specific time steps, and am using the vector play method as described in the two links in the comments below. Unfortunately, the vector is clearly not playing into...
by aliaped
Mon May 24, 2021 11:27 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 5
Views: 10583

Re: GUI bug in netbuilder?

On it. Thanks Ted. I will follow up shortly.
by aliaped
Mon May 24, 2021 10:40 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 5
Views: 10583

Re: GUI bug in netbuilder?

Interesting, when I tried to save the NetBuilder and assorted paraphernalia to a .ses file, I got an endless loop of seg fault errors. I restarted, all is well again. Or, rather, right back where we started. Resizing the window was something I tried, with no luck. Here is the version header. NEURON ...
by aliaped
Mon May 24, 2021 9:51 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 5
Views: 10583

GUI bug in netbuilder?

Hi there, Thank you for taking the time to read my question today. I am having a problem connecting cells in the netbuilder. I read the netbuilder tutorial and think I am correctly using the GUI to connect cells to synapse labels instead of the synapse locations, but am having no luck. The line stay...
by aliaped
Mon May 03, 2021 12:43 pm
Forum: NEURON + Python
Topic: Correcting poor code design
Replies: 3
Views: 4530

Re: Correcting poor code design

Hi Ted, Thank you for your thorough response. I fear I left something out of my initial question: while i love the gui tools, I would like to use as few of them as possible. I am trying to fully control and modify my model with python code to eliminate the clicking of buttons. I don't know how to co...
by aliaped
Mon May 03, 2021 10:39 am
Forum: NEURON + Python
Topic: Correcting poor code design
Replies: 3
Views: 4530

Correcting poor code design

Hi there! First off, thank you for taking time to look into my question. I started my project working mostly with the gui, and am now transitioning to working largely with python. When I was building my gui projects, I saved all my items (rig, UI, CellBuilder, etc) in one session file. I saved a new...
by aliaped
Mon Apr 12, 2021 10:30 am
Forum: NEURON + Python
Topic: Assigning values to a mechanism over all sections in anatomically detailed model
Replies: 3
Views: 4529

Assigning values to a mechanism over all sections in anatomically detailed model

Hi there, First off, thank you for taking the time to look into my question. I am new to scripting in python, but have been working with .hoc and neuron for the last year or so. I am trying to do something in python that seems elementary, and can be done in the .hoc interpreter with one line of code...
by aliaped
Wed Feb 24, 2021 1:26 pm
Forum: The GUI
Topic: Convert a channel from .mod to the channel builder to modify gating in the GUI
Replies: 4
Views: 10466

Re: Convert a channel from .mod to the channel builder to modify gating in the GUI

Dear Ted, Thank you for your prompt and thorough answer to my question! I have actually been doing what you suggested, graphing the ninf and pinf values from the the .mod file vs. voltage and visualising/modifying the parameters in the Mechanism Viewer. I was drawn to the channel builder for a singl...
by aliaped
Tue Feb 23, 2021 2:47 pm
Forum: The GUI
Topic: Convert a channel from .mod to the channel builder to modify gating in the GUI
Replies: 4
Views: 10466

Convert a channel from .mod to the channel builder to modify gating in the GUI

Hi there! First off, thank you in advance for reading my question. I have a .mod file from modelDB specifying a high threshold potassium channel. I am not sure the language, but I think it is NMODL because it is a .mod file. See code below. : High threshold potassium chanel from : Contribution of th...
by aliaped
Thu Aug 13, 2020 10:32 am
Forum: MSWin
Topic: DLL LOAD FAILED importing python packages from anaconda into neuron
Replies: 1
Views: 13610

DLL LOAD FAILED importing python packages from anaconda into neuron

I am having issues with neuron recognizing and finding python packages for import. Install SOP: https://neuron.yale.edu/ftp/neuron/nrn_mswin_install.pdf Output from bash terminal: bash-4.4$ cd c:/nrn bash-4.4$ mpiexec -n 2 nrniv -mpi test0.hoc NEURON -- VERSION 7.7.2 7.7 (2b7985ba) 2019-06-20 Duke, ...