Hi Ted,
I take all of your suggestions. I kept adding an exit() call to check where MPI library starts to failing, but took a while
to understand that I was accessing a cell that is not associated with the rank it was made; I was wishing some handy tool
like a debugger.
Itaru.
Search found 27 matches
- Wed Jan 20, 2021 10:50 pm
- Forum: Parallel NEURON
- Topic: Efficient way of debugging Python scripts with MPI library
- Replies: 4
- Views: 10408
- Tue Jan 19, 2021 11:55 pm
- Forum: Parallel NEURON
- Topic: Efficient way of debugging Python scripts with MPI library
- Replies: 4
- Views: 10408
Efficient way of debugging Python scripts with MPI library
Hi,
If someone knows an efficient way of debugging a Python script (with MPI library enabled) on a parallel system, let me know.
Thanks,
Itaru.
If someone knows an efficient way of debugging a Python script (with MPI library enabled) on a parallel system, let me know.
Thanks,
Itaru.
- Tue Aug 11, 2020 8:17 pm
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Defining a POINTER to be a list
- Replies: 16
- Views: 27667
Re: Defining a POINTER to be a list
Thank you, as you suggested, I've incorporated the model Traub et al. uploaded for the community and follow their
programming for NEURON.
programming for NEURON.
- Tue Aug 11, 2020 2:44 am
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Defining a POINTER to be a list
- Replies: 16
- Views: 27667
Re: Defining a POINTER to be a list
Hello,
I am facing the same issue, but time is now 2020. Dear experts, is there an easy way to
accomplish to declare an array of POINTERs in a Point Process?
I am facing the same issue, but time is now 2020. Dear experts, is there an easy way to
accomplish to declare an array of POINTERs in a Point Process?
- Fri May 15, 2020 1:05 am
- Forum: UNIX/Linux
- Topic: OpenMP based parallelism in NEURON
- Replies: 1
- Views: 22345
OpenMP based parallelism in NEURON
Is it possible to use that in our models?
- Wed Mar 18, 2020 1:55 am
- Forum: Getting started
- Topic: Is Mersenne Twister RNG available in NEURON
- Replies: 2
- Views: 9590
Re: Is Mersenne Twister RNG available in NEURON
I should be asking differently, what's the most reliable RNG in NEURON?
- Tue Mar 17, 2020 9:35 pm
- Forum: Getting started
- Topic: Is Mersenne Twister RNG available in NEURON
- Replies: 2
- Views: 9590
Is Mersenne Twister RNG available in NEURON
I am going to do a simulation of a network of a few thousands of neurons, but to be cautious,
I'd like to use the MT RNG if available in NEURON.
I'd like to use the MT RNG if available in NEURON.
- Tue Feb 25, 2020 8:17 pm
- Forum: Parallel NEURON
- Topic: Is the CVode class implemented so that it scales well with many nodes?
- Replies: 2
- Views: 10078
Is the CVode class implemented so that it scales well with many nodes?
I ask this because I will be using the class. Thanks!
- Thu Feb 20, 2020 7:35 pm
- Forum: Suggestions and Feedback
- Topic: Mailing list for all topics?
- Replies: 1
- Views: 17807
Mailing list for all topics?
I would like also mailing lists to exchange opinions.
- Thu Feb 20, 2020 5:55 pm
- Forum: Getting started
- Topic: Standard set of .hoc scripts for supercomputers
- Replies: 0
- Views: 34284
Standard set of .hoc scripts for supercomputers
Hi,
I am wondering whether there is a set of .hoc files for assessing a supercomputer performance; I would like
to use it with a performance toolset optimized for supercomputing environments.
Itaru.
I am wondering whether there is a set of .hoc files for assessing a supercomputer performance; I would like
to use it with a performance toolset optimized for supercomputing environments.
Itaru.
- Mon Feb 17, 2020 6:07 pm
- Forum: UNIX/Linux
- Topic: How do I collect data for plots without IV
- Replies: 4
- Views: 18646
Re: How do I collect data for plots without IV
Is there a doc for the hoc based programmers?
- Mon Feb 17, 2020 3:50 am
- Forum: UNIX/Linux
- Topic: How do I collect data for plots without IV
- Replies: 4
- Views: 18646
How do I collect data for plots without IV
As I will be running NEURON on a supercomputer, I'd like to make plots off from saved text data.
Anyone had some experience in a larger computing environment?
Anyone had some experience in a larger computing environment?