www.neuron.yale.edu

Quick question, it doesn't seem to remove Sections? Isn't there a method to truly really reload the NEURON module as if it was freshly imported? Would you recommend importlib's reload?

What would be the steps to check mod whether mod files have a correct INITIAL block? Could you provide some steps like this? * Scan over the entire mod file and look for all "state variables" (lines starting with _____ inside of a _____ block) * Make sure that every "state variable&qu...

So is there a method to fully reset the simulator?

ted wrote: ↑Fri Nov 22, 2019 9:10 pm Please rephrase the question. I don't quite know what you're asking.

Is a child section's 0 end xyz always the same as its parent's 1 end xyz?

Is there a possibility to install NEURON in a Windows/MacOS environment that doesn't have a GUI? Specifically Travis CI.

Looks good! Thanks for this

Roadmap:

[X] Setting name conflict preferences using `glia select` and `glia.select`
[ ] Local mod file management
[ ] A hosted Glia package index

Ok, so I can safely assume that Neuron always connects sections end-to-end? What exactly does that x value represent then?

Any specific reasons why nrnivmodl would not work after running the standard Windows installer?

Will there be anyone maintaining this with new versions?

Hi! I'd like to proudly present the very first version of Glia: a package manager for NEURON. Glia Get it with: pip install nrn-glia It allows you to install package with either pip install <package-name> or glia install <package-name> and will automatically discover and compile the mod files within...

Sorry for the stream of consciousness. If anyone is interested in having Python compile their mod files. Here's how I did it for windows: nrn_path = os.getenv('NEURONHOME') os.chdir(neuron_mod_path) cyg_path = nrn_path.replace(":\\","\\").replace("\\","/") pro...

These have been my shell attempts just to get a proof of concept going on my computer (hence the hardcoded directories) Using nrniv.exe process = subprocess.Popen(["C:\\nrn\\bin\\nrniv.exe", "-nopython", "c:/nrn/lib/hoc/mknrndll.hoc", neuron_mod_path], stdin=subprocess....

I'm making a package manager for NEURON called Glia, have a look here https://pypi.org/project/nrn-glia/. I'd like a platform independent way of compiling a set of folders, similar to how `nrnivmodl folder1 folder2 folder3` would work. Can I somehow import this from the neuron package and run in the...

These are software deployment basics, but thanks for the heads up. libnrnmech.so inside of the hidden .libs folder does the trick