www.neuron.yale.edu

Thank you for your reply, but I'm still confused even after reading the comments. I am trying to initially compute the potential of the neuron segments by COMSOL and then insert the data I produced into this code. Then in what variable (ex_xtra or er_xtra), should I insert the data of potential I've...

Hello, I'm trying to interpret hoc and NMODL files and have questions about some codes. The sentences below are the codes that I want to ask. This code came from https://senselab.med.yale.edu/modeldb/showmodel.cshtml?model=144589#tabs-1 ModelDB: Modulation of hippocampal rhythms by electric fields a...

Thanks for your kind explanation. Also, I read the article you recommended. However, I still have a question. As you mentioned, The error of of the approximate solution is generally reduced if time and space are chopped into smaller pieces. ... f the spatial or temporal discretization is too fine, r...

Hello, I'm a graduate student who studied with NEURON. I conducted extracellular stimulation to anatomically realistic models via the code written by Ted, and investigated electric field thresholds (through apc.n, I checked somatic membrane polarized over 0 or not). However, there was difference in ...

Sorry for URL.
Model accession : 2488

https://senselab.med.yale.edu/ModelDB/s ... ls/#tabs-1
This is working URL.

Thank you

Hello,
I'm using 'Z. F. Mainen and T. J. Sejnowski (1996)'s model'
https://senselab.med.yale.edu/ModelDB/s ... ls/#tabs-1
I want to bifurcate axon and modify the angle at branching point.

Is there way to do it in GUI tools? or modify the 3D coordinate?

Thank you in advance.

Thanks for providing information.
I changed diameter by using pt3dchange. Thanks!

Hello, I'm beginner and trying to modify morphology of detailed models. I have question how this codes works. Z. F. Mainen and T. J. Sejnowski (1996)'s model https://senselab.med.yale.edu/ModelDB/showmodel.cshtml?model=2488&file=/cells/#tabs-1 This is L5 pyramidal neuron: (since it is too long t...

Thanks for your answer!
I learned a lot. And all things worked :)

Thanks for your kind explanation, Ted. I monitored apc.n by increasing stimulation amplitude to find out the point where apc.n >0 (threshold). And I want to see apc.n of soma, dendrites and axon. I read NEURON book ch.4 and 5. Thanks for your suggestion. But still, there is a problem. I used apc = n...

Hi, I have some questions about APCount. 1. I read explanation about APCount at programmer's reference. apc = h.APCount(section(x)) Here, section(x) should be written only number? For eaxmple, I write apc=h.APCount(0.5) for see threshold of soma. Can I use section name? 2. If not, How can I know the...

umm.. I found the error! exactly In code, without any function I made or loop, I put only forall {printf("%s: %d \n", secname(), n3d())} Then, the result looks axon did not have its coordination. loading membrane mechanisms from nrnmech.dll Additional mechanisms from files ca.mod cad.mod k...

oh, I didn't copy all the result. The error was still happened.
And I found out that when I print secname and nn in front of for loop, The axon part's outcome is zero.

This is code which I put what you said-1.2. for ii = 1, nseg { print ii xr = range.x[ii] printf("one") center_pt.x[0] = xint.x[ii] printf("two") center_pt.x[1] = yint.x[ii] printf("three") center_pt.x[2] = zint.x[ii] printf("four") printf ("\n") //pr...

I got your point. Now I tried to print in a for loop like this. for ii = 1, nseg { xr = range.x[ii] printf("one") print ii center_pt.x[0] = xint.x[ii] printf("two") print ii center_pt.x[1] = yint.x[ii] printf("three") print ii center_pt.x[2] = zint.x[ii] printf("fo...