Search found 16 matches
- Mon Oct 16, 2017 4:11 pm
- Forum: NetPyNE
- Topic: Issue running model with 20 cores or more
- Replies: 7
- Views: 25025
Re: Issue running model with 20 cores or more
That is okay, thank you for taking a look. I apologize that the LA_Template.py file was missing. It is now in the folder that I shared with you. I have not tried running it for a shorter amount of time but I will give it a try and see if that is the issue. I will also try and update to NEURON versio...
- Tue Oct 03, 2017 4:21 pm
- Forum: NetPyNE
- Topic: Issue running model with 20 cores or more
- Replies: 7
- Views: 25025
Re: Issue running model with 20 cores or more
Hi guys, I am still running into issue when I try to run more than 20 cores and in some cases the issue starts after 12 cores. I can run my programs fine with 12 but when I try to run 18 I get the same error. I have updated my code a little bit and have attached a link here: https://drive.google.com...
- Wed Aug 23, 2017 10:29 am
- Forum: The GUI
- Topic: Can I import channels into CellBuilder?
- Replies: 2
- Views: 20153
Re: Can I import channels into CellBuilder?
Thanks,
Brenyn
Brenyn
- Tue Aug 22, 2017 1:06 pm
- Forum: The GUI
- Topic: Can I import channels into CellBuilder?
- Replies: 2
- Views: 20153
Can I import channels into CellBuilder?
Hey guys, I am new to CellBuilder and I was curious if there was a way to import channels into the GUI so that I could have more channels than just pas, extracellular, and hh? The reason I am asking is that I want to try to automate the process of building a cell with as many compartments and channe...
- Tue Aug 22, 2017 12:59 pm
- Forum: NetPyNE
- Topic: Issue running model with 20 cores or more
- Replies: 7
- Views: 25025
Re: Issue running model with 20 cores or more
Here is the link to my code, this includes my main file - 100_Cell_LA.py, my template - LA_Template.py, my output file with error - results*.out, and my batch file used - batch_file.sh. https://drive.google.com/open?id=0B0cn-dhZx0_HTGdmSnJfVVROM2M The information about my machine is as follows: OS: ...
- Mon Aug 21, 2017 10:53 am
- Forum: The GUI
- Topic: Using CellBuilder without Using GUI
- Replies: 2
- Views: 16280
Re: Using CellBuilder without Using GUI
Thank you for your response. I will take a look into the threads you posted.
- Thu Aug 17, 2017 4:20 pm
- Forum: The GUI
- Topic: Using CellBuilder without Using GUI
- Replies: 2
- Views: 16280
Using CellBuilder without Using GUI
Hey guys, I am wondering if there is a way to use CellBuilder without using the GUI? I am wanting to build a template that uses the CellBuilder code but without having to go through the GUI, maybe just have a function that feeds all the necessary parameters to the CellBuilder code. Is this something...
- Tue Aug 08, 2017 1:56 pm
- Forum: NetPyNE
- Topic: Issue running model with 20 cores or more
- Replies: 7
- Views: 25025
Issue running model with 20 cores or more
I have an issue when running my model with more than 20 cores. I can run with 12 cores just fine but when I run with 20 I get this error when gathering data. Everything before Gathering data runs properly. Gathering data... terminate called after throwing an instance of 'std::bad_alloc' what(): std:...
- Wed Jun 21, 2017 1:09 pm
- Forum: NetPyNE
- Topic: AttributeError:'module' object has no attribute 'allSimData'
- Replies: 3
- Views: 19515
Re: AttributeError:'module' object has no attribute 'allSimD
Here is the updated code. If I run on more than 1 core it gives the same error. The main thing that has changed is the edition of trying to save the spike ids and spike times to a text file. from netpyne import specs, sim, analysis from random import randint # Varible Definitions simTime = 276000 to...
- Tue Jun 20, 2017 2:58 pm
- Forum: NetPyNE
- Topic: AttributeError:'module' object has no attribute 'allSimData'
- Replies: 3
- Views: 19515
AttributeError:'module' object has no attribute 'allSimData'
Hey all, I was wondering if anyone has run into the problem of trying to access the spiking data when running in parallel? This is the error that I am getting: spkid = sim.allSimData['spkid'] AttributeError: 'module' object has no attribute 'allSimData' When only running on one core it works fine bu...
- Tue Jun 20, 2017 1:47 pm
- Forum: NetPyNE
- Topic: How to set initial voltage of simulation
- Replies: 6
- Views: 32119
Re: How to set initial voltage of simulation
After searching the documentation I did actually find where to set the initial voltage of individual cells. I was trying to set it in the wrong location. Thank you for your help.
- Mon Jun 19, 2017 2:43 pm
- Forum: NetPyNE
- Topic: How to set initial voltage of simulation
- Replies: 6
- Views: 32119
How to set initial voltage of simulation
Hey all, I was trying to figure out how to set the initial voltage of a simulation. I believe this is the h.v_init variable in python. I tried using the simConfig.hParams command to change this but the initial voltage stayed at -65 mV. I tried these to lines of code: simConfig.hParams = {'v_init': -...
- Fri Jun 16, 2017 10:53 am
- Forum: NetPyNE
- Topic: Issue stimulating cells that I imported
- Replies: 2
- Views: 19031
Re: Issue stimulating cells that I imported
Thanks you. I should have caught that. Thanks for letting me know about the error checking, I may use that feature in the future.
Brenyn
Brenyn
- Thu Jun 15, 2017 4:58 pm
- Forum: NetPyNE
- Topic: Issue stimulating cells that I imported
- Replies: 2
- Views: 19031
Issue stimulating cells that I imported
Hey all, I am trying to recreate a model from hoc that is of the Lateral Amygdala. I am having a few issues that I would like to discuss with you. The first issue is that my model doesn't seem like the cells are being imported properly due to them not spiking when given an input, other than the PN_A...
- Tue May 02, 2017 5:07 pm
- Forum: NEURON + Python
- Topic: Python NEURON
- Replies: 15
- Views: 29407
Re: Python NEURON
I believe you need to have the python 2.7 version of anaconda installed for NEURON to work with python properly.
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