www.neuron.yale.edu

Oh, but that's perfect then! I can activate CVode and get faster simulations without loss in integration precision. Thank you very much for your answer!

Hello, I have a model with multiple excitatory and inhibitory synapses that I feed previously constructed spike trains via VecStim() mechanism. Now in order to speed up the simulation I am thinking of using the variable time step by activating CVode. What I am concerned about is, how are the incomin...

Just as an update, testing the script from a virtual environment with Python 2.7.13 and NEURON from conda repository, I get the same error. So it probably is not tied to the Python version.

@ramcdougal I will try to adapt the script to work in that way and see what happens, thanks for the suggestion!

He has the same NEURON version, but his Python is 2.7.13 (compared to my 2.7.15). I will see if it is possible to create a virtual environment with that particular sub-version and compile NEURON with it.

Hello, I have a problem where trying to run a NEURON simulation from a Python script more than once (e.g. in a loop) would result in a hoc error* after the first successful run. The only way to handle it that I've found is to exit that Python instance, create a new one, and call the script again. Fu...

Thank you for your answer, and for the reading list! Some of these things I've already consulted, some are new to me and very interesting. Most parameter changes can be accomplished by a simple numerical assignment statement in hoc or Python. That's what I'm hoping for. I just want to make sure that...

Hello all, I am interested in a model of striatal medium spiny neuron proposed in the paper by Gruber et al. 2003 . I have found a NEURON implementation on ModelDB , but going through the files I've encountered a problem with how units of ion channel variables are implemented in the simulation. Sinc...