Search found 8 matches

by bosse89
Mon May 23, 2016 3:38 am
Forum: NEURON + Python
Topic: import swc file for network simulation
Replies: 2
Views: 8089

Re: import swc file for network simulation

The code worked very well. Thank you!
by bosse89
Fri May 20, 2016 5:24 am
Forum: NEURON + Python
Topic: import swc file for network simulation
Replies: 2
Views: 8089

import swc file for network simulation

I have a neuron model in python that works great for single cell simulations. An swc file is used for importing the morphology: ################################################ Import = h.Import3d_SWC_read() Import.input('morphology.swc') imprt = h.Import3d_GUI(Import, 0) imprt.instantiate(None) ###...
by bosse89
Mon Apr 20, 2015 4:42 am
Forum: Getting started
Topic: IClamp affects potential even though amp=0
Replies: 6
Views: 2612

Re: IClamp affects potential even though amp=0

I will try the fixed time steps. Thank you!
by bosse89
Fri Apr 17, 2015 11:07 am
Forum: Getting started
Topic: IClamp affects potential even though amp=0
Replies: 6
Views: 2612

Re: IClamp affects potential even though amp=0

NEURON -- VERSION 7.3 ansi (1078:2b0c984183df) 2014-04-04 Not sure I understand the question: "Are you using fixed time step integration, or variable time steps?" I run time steps in neuron in this way: "while (t < tstop) { fadvance() }" I re-run my neuron-simulation using matlab and changing input ...
by bosse89
Fri Apr 17, 2015 4:01 am
Forum: Getting started
Topic: IClamp affects potential even though amp=0
Replies: 6
Views: 2612

IClamp affects potential even though amp=0

I am trying to do a phase-response curve (PRC) for my neuron. I did this before in a single-compartment neuron without any problems. This new neuron is multicompartment and a lot of different currents. In a prc, first you have a spike-train, then you stimulate with a low current for a small amount o...
by bosse89
Tue Jul 15, 2014 10:58 am
Forum: MSWin
Topic: Run NEURON without cygwin popping up
Replies: 1
Views: 4959

Run NEURON without cygwin popping up

I had a feeling I should be able to find this myself but I simply havn't. How do I run NEURON without cygwin popping up each time?
I'm using nrniv instead of nrngui so no gui/plots is coming up at least.
by bosse89
Tue Jul 15, 2014 10:52 am
Forum: Getting started
Topic: Phase resetting/response curves (PRC)
Replies: 2
Views: 1621

Re: Phase resetting/response curves (PRC)

Try searching ModelDB. https://senselab.med.yale.edu/modeldb/ . Do a search that combines curated keywords (e.g. simulator of interest) with full text search (prc or phase response for example). I searched , and found project GPeNeuronKitano, but did find anything useable. So I'm halfway coding it ...
by bosse89
Fri Jul 11, 2014 3:31 am
Forum: Getting started
Topic: Phase resetting/response curves (PRC)
Replies: 2
Views: 1621

Phase resetting/response curves (PRC)

Hi, I've made a NEURON model and I want to know if this neuron is PRC-type I or II. One can find numerical/non-experimental ways of doing this from papers like : Ermentrout, B. Type I membranes, phase resetting curves, and synchrony. Neural Computation 8:979-1001, 1966 Rinzel, J. and Ermentrout, G. ...