Search found 5 matches

by Nilapratim_S
Mon Oct 16, 2023 1:16 pm
Forum: NEURON + Python
Topic: h.parallelContext in a model being simulated on a cluster
Replies: 3
Views: 11036

Re: h.parallelContext in a model being simulated on a cluster

I must also highlight a key difference between the earlier and new versions of the models.
The earlier parallelized HOC model (that I used to simulate on the cluster as well) used APCount().
While porting the model to Python I have used h.NetCon instead, for spike detection.

Regards,
Nil
by Nilapratim_S
Mon Oct 16, 2023 12:59 pm
Forum: NEURON + Python
Topic: h.parallelContext in a model being simulated on a cluster
Replies: 3
Views: 11036

Re: h.parallelContext in a model being simulated on a cluster

Thank you for replying, Ted.

On my Mac I have: NEURON -- VERSION 8.2.0 HEAD (156b9dee3) 2022-07-01
On the cluster: NEURON -- VERSION 8.0.2 HEAD (f0ca7454) 2022-02-02

Regards,
Nil
by Nilapratim_S
Mon Oct 16, 2023 1:10 am
Forum: NEURON + Python
Topic: h.parallelContext in a model being simulated on a cluster
Replies: 3
Views: 11036

h.parallelContext in a model being simulated on a cluster

I am porting an old model implemented in HOC to Python. The model is that of a pyramidal neuron which has a soma, dendritic arbor along with myelinated axon and collaterals. The key idea is to elicit spikes in the soma and observe their propagation along the axon and collaterals. I am trying to para...
by Nilapratim_S
Sat Oct 26, 2013 5:39 am
Forum: Adding new mechanisms and functions to NEURON
Topic: Intercellular Calcium Signalling
Replies: 2
Views: 1839

Re: Intercellular Calcium Signalling

Hi Ted,

I have mailed as suggested by you.

Regards,
Nilapratim
by Nilapratim_S
Thu Oct 24, 2013 6:52 am
Forum: Adding new mechanisms and functions to NEURON
Topic: Intercellular Calcium Signalling
Replies: 2
Views: 1839

Intercellular Calcium Signalling

Hi All, I wish to implement intercellular calcium signalling in a network of cells. I was unable to find any lead on this aspect in the NEURON Forum. As I conceptualize, it would require the variation of Calcium-concentration in one cell to be made available to another cell after every time-step. Si...