Search found 6 matches

by OspreyNeurons
Wed Jul 03, 2013 9:44 pm
Forum: NEURON hacks
Topic: Automatically run multiple simulations.
Replies: 6
Views: 10461

Re: Automatically run multiple simulations.

For whatever reason my shell doesn't like trying to make a copy of .profile. It clearly states in the UNIX library that cp will copy files and directories but when I try to use cp I get that .profile is a directory (Not copied). I was able to place the hoc files were I can access them. We use a prog...
by OspreyNeurons
Sat Jun 29, 2013 9:16 pm
Forum: NEURON hacks
Topic: Automatically run multiple simulations.
Replies: 6
Views: 10461

Re: Automatically run multiple simulations.

No worries. The series batch won't work for my particular situation as all the synapses will change between each run rather then adjusting a parameter. My environment variables were not set correctly but I am able to temporarily fix that by using the following code (although once I shut down the she...
by OspreyNeurons
Tue Jun 25, 2013 9:44 pm
Forum: NEURON hacks
Topic: Automatically run multiple simulations.
Replies: 6
Views: 10461

Re: Automatically run multiple simulations.

Hey Ted, thanks for your timely response. I actually will only be using one cell from the model so that makes things a bit easier. I would really like to run Neuron in a 'batch' mode. I have found that I can run a hoc file through Neuron by entering in the following code instead of dragging and drop...
by OspreyNeurons
Tue Jun 18, 2013 10:50 pm
Forum: NEURON hacks
Topic: Automatically run multiple simulations.
Replies: 6
Views: 10461

Automatically run multiple simulations.

Hello all, I am running some simulations for a research project and I would like to automate the process. Currently I have to go into the .hoc file and change the .DAT file name each run and I have hundreds of runs. Each .DAT file consists of information about where to place the synapses. I would li...
by OspreyNeurons
Mon May 27, 2013 10:28 am
Forum: OS X
Topic: Cannot Find X11
Replies: 5
Views: 7082

Re: Cannot Find X11

Thanks Hines, I saw that the instructions were for 10.7 and above however I figured some of the same things would be required. Initially when I would drag the mod files onto the mknrndll I would get a make command error. After downloading a gcc, the mercurial program, and following the autoconf, aut...
by OspreyNeurons
Sun May 26, 2013 8:07 pm
Forum: OS X
Topic: Cannot Find X11
Replies: 5
Views: 7082

Cannot Find X11

Hello all, I am new to this program/forum so please pardon my limited knowledge of running Neuron. My issue arose when trying to run a model that was initially compiled and run on a Windows machine. I thought it may have something to do with now trying to run it on a Mac but that doesn't seem to be ...