NEURON Hands-on Course
E
XERCISES
Table of Contents
1. Lipid Bilayer
3
2. Hodgkin - Huxley axon
5
3. Ball - Stick model
7
4. HOC exercises
19
5. Model Control : Arbitrary forcing functions
29
6. Model Control : Simulation Families
33
7. Linear Circuits 1 : Two electrode voltage clamp
39
8. NMODL : HH type channels
45
9. NMODL : Kinetic Scheme : potassium channel
47
10. Using ModelDB
61
11. NMODL : Kinetic Scheme : calcium pump
67
12. NMODL : Parameter Discontinuities : pulse stimulus
71
13. Networks : discrete event simulations with artificial cells
75
14. Networks : continuous and hybrid simulations with cells from the CellBuilder
79
15. Hopfield Brody synchronization (sync) model
83
16. Custom initialization
91
17. Working with morphometric data
95
18. Analyzing electrotonus
103
Informal extras
Some useful hoc idioms
111
Vector/Matrix : Reading data
113
Vector/Matrix : Subtracting linear response
115
MyFirstNEURON
by Arthur Houweling
(remote)
Linear Circuits 2: Rectifying gap junction
117
NEURON hands-on course
Copyright © 1998-2005 by N.T. Carnevale and M.L. Hines, all rights reserved.