NEURON Hands-on Course
E
XERCISES
Table of Contents
1. Lipid Bilayer
5
2. Hodgkin - Huxley axon
7
3. Ball - Stick model
9
4. Model Control : Arbitrary forcing functions
27
5. Model Control : Simulation Families
33
6. Model Control : Inhomogeneous range variables
39
7. Linear Circuits 1: Two electrode voltage clamp
49
8. NMODL : HH type channels
57
9. NMODL : Kinetic Scheme : potassium channel
61
10. NMODL : Kinetic Scheme : calcium pump
83
11. MODLUNIT : changing pump units to picomoles/cm
2
87
12. NMODL : Parameter Discontinuities : pulse stimulus
93
13. Networks : discrete event simulations with artificial cells
97
14. Networks : Continuous and hybrid simulations with cells from the CellBuilder
109
15. Networks : Setting up a small net with hoc
129
16. Networks : Setting up many connections
131
17. Working with morphometric data
133
18. Analyzing electrotonus
143
Informal extras
Some useful hoc idioms
153
Vector/Matrix : Reading data
155
Vector/Matrix : Subtracting linear response
161
Working with PostScript and idraw figures
163
A short idraw exercise
171
MyFirstNEURON
by Arthur Houweling
(remote)
Linear Circuits 2: Rectifying gap junction
173
Networks : Hopfield/Brody model : 1) Synchronized output from same frequency but asynchronous noisy input
179
NEURON hands-on course
Copyright © 1998-2001 by N.T. Carnevale and M.L. Hines, all rights reserved.