NEURON Hands-on Course

EXERCISES

Table of Contents

1. Lipid Bilayer

5

2. Hodgkin - Huxley axon

7

3. Ball - Stick model

9

4. Model Control : Arbitrary forcing functions

27

5. Model Control : Simulation Families

33

6. Model Control : Inhomogeneous range variables

39

7. Linear Circuits 1: Two electrode voltage clamp

49

8. NMODL : HH type channels

57

9. NMODL : Kinetic Scheme : potassium channel

61

10. NMODL : Kinetic Scheme : calcium pump

83

11. MODLUNIT : changing pump units to picomoles/cm2

87

12. NMODL : Parameter Discontinuities : pulse stimulus

93

13. Networks : discrete event simulations with artificial cells

97

14. Networks : Continuous and hybrid simulations with cells from the CellBuilder

109

15. Networks : Setting up a small net with hoc

129

16. Networks : Setting up many connections

131

17. Working with morphometric data

133

18. Analyzing electrotonus

143



Informal extras

Some useful hoc idioms

153

Vector/Matrix : Reading data

155

Vector/Matrix : Subtracting linear response

161

Working with PostScript and idraw figures

163

A short idraw exercise

171

MyFirstNEURON by Arthur Houweling

(remote)

Linear Circuits 2: Rectifying gap junction

173

Networks : Hopfield/Brody model : 1) Synchronized output from same frequency but asynchronous noisy input

179


NEURON hands-on course
Copyright © 1998-2001 by N.T. Carnevale and M.L. Hines, all rights reserved.