NEURON Hands-on Course
E
XERCISES
Table of Contents
1. Lipid Bilayer
3
2. Hodgkin - Huxley axon
5
3. Ball - Stick model
7
4. Model Control : Arbitrary forcing functions
19
5. NMODL : HH type channels
23
6. HOC exercises
25
7. Working with morphometric data
35
8. Specifying inhomogeneous channel distributions with the CellBuilder
45
9. Using ModelDB and Model View
49
10. Linear Circuits : Two electrode voltage clamp
55
11. Optimizing a model
61
12. Greater performance on Multicore workstations
77
13. Networks : discrete event simulations with artificial cells
81
14. Networks : continuous simulations of nets with biophysical model cells
85
15. Hopfield Brody synchronization (sync) model
89
16. State and parameter discontinuities
97
17. Custom initialization
99
18. Analyzing electrotonus
103
Informal extras
Some useful hoc idioms
111
Vector/Matrix : Reading data
113
Vector/Matrix : Subtracting linear response
115
MyFirstNEURON
by Arthur Houweling
(remote)
Model Control : Simulation families
117
Linear Circuits 2: Rectifying gap junction
123
Parallel Computing: MPI
129
Python
131
NEURON hands-on course
Copyright © 1998-2010 by N.T. Carnevale and M.L. Hines, all rights reserved.