I'm testing NEURON in our cluster with this code.
http://www.neuron.yale.edu/phpBB2/viewt ... 7ddbde59df
I got the error like this:
-> mpiexec -n 2 nrniv -mpi test1.hoc
Warning: no DISPLAY environment variable.
--No graphics will be displayed.
NEURON -- Release 6.0.1 (1780) 2007-06-12
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2007
See http://www.neuron.yale.edu/credits.html
dlopen("libjvm.so") failed: libjvm.so: cannot open shared object file: No such file or directory
JNI_CreateJavaVM returned -1
Info: optional feature Java VM is not present.
first instance of j
first instance of itmp
first instance of using_cvode_
first instance of movie_frame_dur_
first instance of realtime
first instance of running_
first instance of rtstart
first instance of stdrun_quiet
first instance of screen_update_invl
first instance of tstop
first instance of steps_per_ms
first instance of nstep_steprun
first instance of runStopAt
first instance of runStopIn
first instance of global_ra
first instance of mapped_nrnmainmenu_
first instance of v_init
first instance of n_graph_lists
first instance of i
first instance of eventslow
first instance of eventcount
first instance of cnt
first instance of a
My id: 0 a=1 time=0
My id: 0 a=1 time=100
-----------------------------------------------------------------------------
It seems that [at least] one of the processes that was started with
mpirun did not invoke MPI_INIT before quitting (it is possible that
more than one process did not invoke MPI_INIT -- mpirun was only
notified of the first one, which was on node n0).
mpirun can *only* be used with MPI programs (i.e., programs that
invoke MPI_INIT and MPI_FINALIZE). You can use the "lamexec" program
to run non-MPI programs over the lambooted nodes.
-----------------------------------------------------------------------------
Warning: no DISPLAY environment variable.
--No graphics will be displayed.
mpirun failed with exit status 252
======================
mpirun failed with exit status 252? What's happen here? thanks.
I assumed that the error is not with this one,
dlopen("libjvm.so") failed: libjvm.so: cannot open shared object file: No such file or directory
mpiexec error messages with test1.hoc
Moderator: wwlytton
Code: Select all
mpiexec -n 2 nrniv -mpi test1.hoc
Warning: no DISPLAY environment variable.