Errors from Vecstim()
Posted: Sun Jan 25, 2015 6:05 pm
Dear all,
I've been stuck by this issue for at least two days. I got the following error message from my network model, when I used VecStim() to drive the synaptic event.
Let me first describe my network model a little first. I have around 300 cells, and some of them was driven by the synaptic events, with event times were scripted in the .txt files. For those cells, I created a synapse first, and then used VecStim() to drive the synaptic events through the synapses. The event times in each text file were randomly generated by Matlab, and sorted in sequences. The network usually works. Because I need to change the time information sometimes, there is always possibilities that the network model didn't work with specific groups of event times and showed the above errors. Initially I suspected my generated event times file had some error inside, like negative times, but then I ruled my doubts out.
I was referred to the thread http://www.neuron.yale.edu/phpbb/viewto ... f=2&t=2147, but it didn't solve my problem. I don't know whether this is because of my paralleled code or not. So I post my question here.
Thanks in advance.
I've been stuck by this issue for at least two days. I got the following error message from my network model, when I used VecStim() to drive the synaptic event.
Code: Select all
40.000000 percent is done!
40.000000 percent is done!
40.000000 percent is done!
net_send td-t = -2.91038e-11 SelfEvent target=VecStim[27] 116666 flag=1
net_send td-t = -2.91038e-11 SelfEvent target=VecStim[27] 116666 flag=1
net_send td-t = -2.91038e-11 SelfEvent target=VecStim[27] 116666 flag=1
net_send td-t = -2.91038e-11 SelfEvent target=VecStim[27] 116666 flag=1
net_send td-t = -2.91038e-11 SelfEvent target=VecStim[27] 116666 flag=1
net_send td-t = -2.91038e-11 SelfEvent target=VecStim[27] 116666 flag=1
[d17B-12:03023] *** Process received signal ***
[d17B-12:03023] Signal: Aborted (6)
[d17B-12:03023] Signal code: (-6)
[d17B-13:20988] *** Process received signal ***
[d17B-13:20988] Signal: Aborted (6)
[d17B-13:20988] Signal code: (-6)
[d17B-13:20987] *** Process received signal ***
[d17B-13:20987] Signal: Aborted (6)
[d17B-13:20987] Signal code: (-6)
[d17B-18:09972] *** Process received signal ***
[d17B-18:09972] Signal: Aborted (6)
[d17B-18:09972] Signal code: (-6)
[d17B-18:09971] *** Process received signal ***
[d17B-18:09971] Signal: Aborted (6)
[d17B-18:09971] Signal code: (-6)
[d17B-18:09973] *** Process received signal ***
[d17B-18:09973] Signal: Aborted (6)
[d17B-18:09973] Signal code: (-6)
[d17B-12:03023] [ 0] /lib64/libpthread.so.0 [0x3baee0ebe0]
[d17B-12:03023] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3bade30265]
[d17B-12:03023] [ 2] /lib64/libc.so.6(abort+0x110) [0x3bade31d10]
[d17B-12:03023] [ 3] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(nrn_net_send+0x10d) [0x2b56003fa3cd]
[d17B-12:03023] [ 4] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(artcell_net_send+0x143) [0x2b56003fc473]
[d17B-12:03023] [ 5] x86_64/.libs/libnrnmech.so [0x2aaab0c029da]
[d17B-12:03023] [ 6] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent16call_net_receiveEP8NetCvode+0x33) [0x2b5600400a23]
[d17B-12:03023] [ 7] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent7deliverEdP8NetCvodeP9NrnThread+0x12a) [0x2b56004009ba]
[d17B-12:03023] [ 8] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode13deliver_eventEdP9NrnThread+0x94) [0x2b5600408684]
[d17B-12:03023] [ 9] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode14deliver_eventsEdP9NrnThread+0x3a) [0x2b56004085ca]
[d17B-12:03023] [10] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode18deliver_net_eventsEP9NrnThread+0x12a) [0x2b56004084da]
[d17B-12:03023] [11] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(deliver_net_events+0x2e) [0x2b56003f044e]
[d17B-12:03023] [12] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0 [0x2b5600128109]
[d17B-12:03023] [13] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_multithread_job+0x21a) [0x2b560013a07a]
[d17B-12:03023] [14] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_fixed_step_group+0x226) [0x2b5600128056]
[d17B-12:03023] [15] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(ncs2nrn_integrate+0x161) [0x2b56003fce91]
[d17B-12:03023] [16] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN3BBS12netpar_solveEd+0xde) [0x2b560043a91e]
[d17B-12:03023] [17] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0 [0x2b560041a05a]
[d17B-12:03023] [18] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(call_ob_proc+0x2ec) [0x2b5600142f3c]
[d17B-12:03023] [19] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_object_component+0x6c8) [0x2b5600142928]
[d17B-12:03023] [20] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_execute+0x5b) [0x2b560013c0ab]
[d17B-12:03023] [21] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0 [0x2b5600910b5c]
[d17B-12:03023] [22] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0(hoc_main1+0x151) [0x2b56009103b1]
[d17B-12:03023] [23] nrniv(ivocmain+0x612) [0x403c82]
[d17B-12:03023] [24] nrniv(main+0x7c) [0x40360c]
[d17B-12:03023] [25] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3bade1d994]
[d17B-12:03023] [26] nrniv(_ZNSt8ios_base4InitD1Ev+0x39) [0x403389]
[d17B-12:03023] *** End of error message ***
[d17B-13:20988] [ 0] /lib64/libpthread.so.0 [0x3baee0ebe0]
[d17B-13:20988] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3bade30265]
[d17B-13:20988] [ 2] /lib64/libc.so.6(abort+0x110) [0x3bade31d10]
[d17B-13:20988] [ 3] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(nrn_net_send+0x10d) [0x2b4e6c2ba3cd]
[d17B-13:20988] [ 4] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(artcell_net_send+0x143) [0x2b4e6c2bc473]
[d17B-13:20988] [ 5] x86_64/.libs/libnrnmech.so [0x2aaab0dfd9da]
[d17B-13:20988] [ 6] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent16call_net_receiveEP8NetCvode+0x33) [0x2b4e6c2c0a23]
[d17B-13:20988] [ 7] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent7deliverEdP8NetCvodeP9NrnThread+0x12a) [0x2b4e6c2c09ba]
[d17B-13:20988] [ 8] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode13deliver_eventEdP9NrnThread+0x94) [0x2b4e6c2c8684]
[d17B-13:20988] [ 9] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode14deliver_eventsEdP9NrnThread+0x3a) [0x2b4e6c2c85ca]
[d17B-13:20988] [10] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode18deliver_net_eventsEP9NrnThread+0x12a) [0x2b4e6c2c84da]
[d17B-13:20987] [ 0] /lib64/libpthread.so.0 [0x3baee0ebe0]
[d17B-13:20987] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3bade30265]
[d17B-13:20987] [ 2] /lib64/libc.so.6(abort+0x110) [0x3bade31d10]
[d17B-13:20987] [ 3] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(nrn_net_send+0x10d) [0x2af4950983cd]
[d17B-13:20987] [ 4] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(artcell_net_send+0x143) [0x2af49509a473]
[d17B-13:20987] [ 5] x86_64/.libs/libnrnmech.so [0x2aaaaf8c89da]
[d17B-13:20987] [ 6] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent16call_net_receiveEP8NetCvode+0x33) [0x2af49509ea23]
[d17B-13:20987] [ 7] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent7deliverEdP8NetCvodeP9NrnThread+0x12a) [0x2af49509e9ba]
[d17B-13:20987] [ 8] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode13deliver_eventEdP9NrnThread+0x94) [0x2af4950a6684]
[d17B-13:20987] [ 9] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode14deliver_eventsEdP9NrnThread+0x3a) [0x2af4950a65ca]
[d17B-13:20987] [10] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode18deliver_net_eventsEP9NrnThread+0x12a) [0x2af4950a64da]
[d17B-13:20987] [11] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(deliver_net_events+0x2e) [0x2af49508e44e]
[d17B-13:20987] [12] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0 [0x2af494dc6109]
[d17B-13:20987] [13] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_multithread_job+0x21a) [0x2af494dd807a]
[d17B-13:20987] [14] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_fixed_step_group+0x226) [0x2af494dc6056]
[d17B-13:20987] [15] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(ncs2nrn_integrate+0x161) [0x2af49509ae91]
[d17B-13:20987] [16] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN3BBS12netpar_solveEd+0xde) [0x2af4950d891e]
[d17B-13:20987] [17] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0 [0x2af4950b805a]
[d17B-13:20987] [18] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(call_ob_proc+0x2ec) [0x2af494de0f3c]
[d17B-13:20987] [19] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_object_component+0x6c8) [0x2af494de0928]
[d17B-13:20987] [20] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_execute+0x5b) [0x2af494dda0ab]
[d17B-13:20987] [21] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0 [0x2af4955aeb5c]
[d17B-13:20987] [22] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0(hoc_main1+0x151) [0x2af4955ae3b1]
[d17B-13:20987] [23] nrniv(ivocmain+0x612) [0x403c82]
[d17B-13:20987] [24] nrniv(main+0x7c) [0x40360c]
[d17B-13:20987] [25] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3bade1d994]
[d17B-13:20987] [26] nrniv(_ZNSt8ios_base4InitD1Ev+0x39) [0x403389]
[d17B-13:20987] *** End of error message ***
[d17B-13:20988] [11] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(deliver_net_events+0x2e) [0x2b4e6c2b044e]
[d17B-13:20988] [12] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0 [0x2b4e6bfe8109]
[d17B-13:20988] [13] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_multithread_job+0x21a) [0x2b4e6bffa07a]
[d17B-13:20988] [14] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_fixed_step_group+0x226) [0x2b4e6bfe8056]
[d17B-13:20988] [15] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(ncs2nrn_integrate+0x161) [0x2b4e6c2bce91]
[d17B-13:20988] [16] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN3BBS12netpar_solveEd+0xde) [0x2b4e6c2fa91e]
[d17B-13:20988] [17] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0 [0x2b4e6c2da05a]
[d17B-13:20988] [18] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(call_ob_proc+0x2ec) [0x2b4e6c002f3c]
[d17B-13:20988] [19] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_object_component+0x6c8) [0x2b4e6c002928]
[d17B-13:20988] [20] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_execute+0x5b) [0x2b4e6bffc0ab]
[d17B-13:20988] [21] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0 [0x2b4e6c7d0b5c]
[d17B-13:20988] [22] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0(hoc_main1+0x151) [0x2b4e6c7d03b1]
[d17B-13:20988] [23] nrniv(ivocmain+0x612) [0x403c82]
[d17B-13:20988] [24] nrniv(main+0x7c) [0x40360c]
[d17B-13:20988] [25] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3bade1d994]
[d17B-13:20988] [26] nrniv(_ZNSt8ios_base4InitD1Ev+0x39) [0x403389]
[d17B-13:20988] *** End of error message ***
[d17B-18:09972] [ 0] /lib64/libpthread.so.0 [0x3baee0ebe0]
[d17B-18:09972] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3bade30265]
[d17B-18:09972] [ 2] /lib64/libc.so.6(abort+0x110) [0x3bade31d10]
[d17B-18:09972] [ 3] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(nrn_net_send+0x10d) [0x2b16ed5063cd]
[d17B-18:09972] [ 4] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(artcell_net_send+0x143) [0x2b16ed508473]
[d17B-18:09972] [ 5] x86_64/.libs/libnrnmech.so [0x2aaaaf8c89da]
[d17B-18:09972] [ 6] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent16call_net_receiveEP8NetCvode+0x33) [0x2b16ed50ca23]
[d17B-18:09972] [ 7] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent7deliverEdP8NetCvodeP9NrnThread+0x12a) [0x2b16ed50c9ba]
[d17B-18:09972] [ 8] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode13deliver_eventEdP9NrnThread+0x94) [0x2b16ed514684]
[d17B-18:09972] [ 9] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode14deliver_eventsEdP9NrnThread+0x3a) [0x2b16ed5145ca]
[d17B-18:09972] [10] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode18deliver_net_eventsEP9NrnThread+0x12a) [0x2b16ed5144da]
[d17B-18:09972] [11] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(deliver_net_events+0x2e) [0x2b16ed4fc44e]
[d17B-18:09972] [12] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0 [0x2b16ed234109]
[d17B-18:09972] [13] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_multithread_job+0x21a) [0x2b16ed24607a]
[d17B-18:09972] [14] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_fixed_step_group+0x226) [0x2b16ed234056]
[d17B-18:09972] [15] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(ncs2nrn_integrate+0x161) [0x2b16ed508e91]
[d17B-18:09972] [16] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN3BBS12netpar_solveEd+0xde) [0x2b16ed54691e]
[d17B-18:09972] [17] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0 [0x2b16ed52605a]
[d17B-18:09972] [18] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(call_ob_proc+0x2ec) [0x2b16ed24ef3c]
[d17B-18:09972] [19] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_object_component+0x6c8) [0x2b16ed24e928]
[d17B-18:09972] [20] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_execute+0x5b) [0x2b16ed2480ab]
[d17B-18:09972] [21] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0 [0x2b16eda1cb5c]
[d17B-18:09972] [22] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0(hoc_main1+0x151) [0x2b16eda1c3b1]
[d17B-18:09972] [23] nrniv(ivocmain+0x612) [0x403c82]
[d17B-18:09972] [24] nrniv(main+0x7c) [0x40360c]
[d17B-18:09972] [25] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3bade1d994]
[d17B-18:09972] [26] nrniv(_ZNSt8ios_base4InitD1Ev+0x39) [0x403389]
[d17B-18:09972] *** End of error message ***
[d17B-18:09971] [ 0] /lib64/libpthread.so.0 [0x3baee0ebe0]
[d17B-18:09971] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3bade30265]
[d17B-18:09971] [ 2] /lib64/libc.so.6(abort+0x110) [0x3bade31d10]
[d17B-18:09971] [ 3] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(nrn_net_send+0x10d) [0x2b8958bcc3cd]
[d17B-18:09971] [ 4] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(artcell_net_send+0x143) [0x2b8958bce473]
[d17B-18:09971] [ 5] x86_64/.libs/libnrnmech.so [0x2aaaafa459da]
[d17B-18:09971] [ 6] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent16call_net_receiveEP8NetCvode+0x33) [0x2b8958bd2a23]
[d17B-18:09971] [ 7] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent7deliverEdP8NetCvodeP9NrnThread+0x12a) [0x2b8958bd29ba]
[d17B-18:09971] [ 8] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode13deliver_eventEdP9NrnThread+0x94) [0x2b8958bda684]
[d17B-18:09971] [ 9] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode14deliver_eventsEdP9NrnThread+0x3a) [0x2b8958bda5ca]
[d17B-18:09971] [10] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode18deliver_net_eventsEP9NrnThread+0x12a) [0x2b8958bda4da]
[d17B-18:09971] [11] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(deliver_net_events+0x2e) [0x2b8958bc244e]
[d17B-18:09971] [12] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0 [0x2b89588fa109]
[d17B-18:09971] [13] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_multithread_job+0x21a) [0x2b895890c07a]
[d17B-18:09971] [14] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_fixed_step_group+0x226) [0x2b89588fa056]
[d17B-18:09971] [15] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(ncs2nrn_integrate+0x161) [0x2b8958bcee91]
[d17B-18:09971] [16] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN3BBS12netpar_solveEd+0xde) [0x2b8958c0c91e]
[d17B-18:09971] [17] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0 [0x2b8958bec05a]
[d17B-18:09971] [18] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(call_ob_proc+0x2ec) [0x2b8958914f3c]
[d17B-18:09971] [19] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_object_component+0x6c8) [0x2b8958914928]
[d17B-18:09971] [20] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_execute+0x5b) [0x2b895890e0ab]
[d17B-18:09971] [21] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0 [0x2b89590e2b5c]
[d17B-18:09971] [22] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0(hoc_main1+0x151) [0x2b89590e23b1]
[d17B-18:09971] [23] nrniv(ivocmain+0x612) [0x403c82]
[d17B-18:09971] [24] nrniv(main+0x7c) [0x40360c]
[d17B-18:09971] [25] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3bade1d994]
[d17B-18:09971] [26] nrniv(_ZNSt8ios_base4InitD1Ev+0x39) [0x403389]
[d17B-18:09971] *** End of error message ***
[d17B-18:09973] [ 0] /lib64/libpthread.so.0 [0x3baee0ebe0]
[d17B-18:09973] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3bade30265]
[d17B-18:09973] [ 2] /lib64/libc.so.6(abort+0x110) [0x3bade31d10]
[d17B-18:09973] [ 3] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(nrn_net_send+0x10d) [0x2b95293293cd]
[d17B-18:09973] [ 4] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(artcell_net_send+0x143) [0x2b952932b473]
[d17B-18:09973] [ 5] x86_64/.libs/libnrnmech.so [0x2aaab0c569da]
[d17B-18:09973] [ 6] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent16call_net_receiveEP8NetCvode+0x33) [0x2b952932fa23]
[d17B-18:09973] [ 7] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN9SelfEvent7deliverEdP8NetCvodeP9NrnThread+0x12a) [0x2b952932f9ba]
[d17B-18:09973] [ 8] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode13deliver_eventEdP9NrnThread+0x94) [0x2b9529337684]
[d17B-18:09973] [ 9] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode14deliver_eventsEdP9NrnThread+0x3a) [0x2b95293375ca]
[d17B-18:09973] [10] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN8NetCvode18deliver_net_eventsEP9NrnThread+0x12a) [0x2b95293374da]
[d17B-18:09973] [11] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(deliver_net_events+0x2e) [0x2b952931f44e]
[d17B-18:09973] [12] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0 [0x2b9529057109]
[d17B-18:09973] [13] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_multithread_job+0x21a) [0x2b952906907a]
[d17B-18:09973] [14] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(nrn_fixed_step_group+0x226) [0x2b9529057056]
[d17B-18:09973] [15] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(ncs2nrn_integrate+0x161) [0x2b952932be91]
[d17B-18:09973] [16] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0(_ZN3BBS12netpar_solveEd+0xde) [0x2b952936991e]
[d17B-18:09973] [17] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrniv.so.0 [0x2b952934905a]
[d17B-18:09973] [18] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(call_ob_proc+0x2ec) [0x2b9529071f3c]
[d17B-18:09973] [19] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_object_component+0x6c8) [0x2b9529071928]
[d17B-18:09973] [20] /share/sw/nrn/nrn-7.3/x86_64/lib/libnrnoc.so.0(hoc_execute+0x5b) [0x2b952906b0ab]
[d17B-18:09973] [21] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0 [0x2b952983fb5c]
[d17B-18:09973] [22] /share/sw/nrn/nrn-7.3/x86_64/lib/liboc.so.0(hoc_main1+0x151) [0x2b952983f3b1]
[d17B-18:09973] [23] nrniv(ivocmain+0x612) [0x403c82]
[d17B-18:09973] [24] nrniv(main+0x7c) [0x40360c]
[d17B-18:09973] [25] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3bade1d994]
[d17B-18:09973] [26] nrniv(_ZNSt8ios_base4InitD1Ev+0x39) [0x403389]
[d17B-18:09973] *** End of error message ***
Let me first describe my network model a little first. I have around 300 cells, and some of them was driven by the synaptic events, with event times were scripted in the .txt files. For those cells, I created a synapse first, and then used VecStim() to drive the synaptic events through the synapses. The event times in each text file were randomly generated by Matlab, and sorted in sequences. The network usually works. Because I need to change the time information sometimes, there is always possibilities that the network model didn't work with specific groups of event times and showed the above errors. Initially I suspected my generated event times file had some error inside, like negative times, but then I ruled my doubts out.
I was referred to the thread http://www.neuron.yale.edu/phpbb/viewto ... f=2&t=2147, but it didn't solve my problem. I don't know whether this is because of my paralleled code or not. So I post my question here.
Thanks in advance.