Installing NEURON on cluster
Posted: Fri Aug 22, 2014 11:46 am
Hi everyone
I've been trying for over 1 month to get NEURON to work on a cluster in Canada (Westgrid). I'm getting close but I still get errors like:
or
I've read an old 2008 post that on clusters I may need to recompile NEURON with this "linux_nrnmech=no" option
Before I spend another day or two recompiling everything was hoping to hear from someone with experience running NEURON on clusters... Any advice is appreciated.
Thanks,
Catubc
UPDATE: The issue may be cluster side... working on it, will post updates.
I've been trying for over 1 month to get NEURON to work on a cluster in Canada (Westgrid). I'm getting close but I still get errors like:
Code: Select all
dlopen failed -
x86_64/.libs/libnrnmech.so: cannot read file data: Is a directoryCode: Select all
/neuron/nrn-7.3/x86_64/lib/liboc.so.0: undefined symbol: __intel_sse2_strchrCode: Select all
./configure --prefix=`pwd` --without-iv --disable-shared --with-paranrn linux_nrnmech=noThanks,
Catubc
UPDATE: The issue may be cluster side... working on it, will post updates.