I am trying to use neuron on a cluster without shared libraries we used the debian package as shifter image and NEURON is runnig well.
The problem is when i am trying to use MPI i get only one process. I am trying to use the simple example from the parallelcontext documentation i get nprocs=1
My guess is that the debian package is not built with MPI is there a waythat is built with MPI?
Thanks in advance
Here is my submitting script:
#SBATCH -N 1
#SBATCH -C haswell
#SBATCH -p debug
#SBATCH -J testMPI
#SBATCH -t 00:01:00
#run the application:
srun -n 1 -c 32 --cpu_bind=cores shifter --image=docker:lgerhardt/neuron:v1 nrniv -mpi testMPI.hoc
And this is what i get:
NEURON -- Release 7.4 (1370:16a7055d4a86) 2015-11-09
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2015