NEURON design
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NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines - 179 Topics
- 871 Posts
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Last post by lneisenman
Wed May 15, 2013 9:32 am
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NEURON + Python
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Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton - 3 Topics
- 16 Posts
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Last post by ted
Thu Apr 11, 2013 10:41 am
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Reaction-diffusion in NEURON
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- Active topics
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- More NEURON + Python documentation
by ted » Mon Mar 24, 2008 10:17 am - 3 Replies
- 6021 Views
- Last post by Tom Close
Mon Jan 07, 2013 4:23 am
- More NEURON + Python documentation
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- More NEURON + Python resources
by mctavish » Wed Dec 01, 2010 4:13 pm - 4 Replies
- 1704 Views
- Last post by wjbeaver
Wed Dec 22, 2010 5:38 pm
- More NEURON + Python resources
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- NEURON does not compile with python3.3
by lneisenman » Wed May 08, 2013 2:39 pm - 2 Replies
- 52 Views
- Last post by lneisenman
Wed May 15, 2013 9:32 am
- NEURON does not compile with python3.3
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- import neuron crash in ipython console
1, 2by ehagen » Sat Sep 15, 2012 11:15 am - 22 Replies
- 828 Views
- Last post by hines
Thu May 09, 2013 11:08 am
- import neuron crash in ipython console
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- Measurement of electronic distances.
by gary » Fri May 03, 2013 11:16 am - 3 Replies
- 50 Views
- Last post by ted
Fri May 03, 2013 4:13 pm
- Measurement of electronic distances.
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- array of point processes
by patoorio » Thu May 02, 2013 1:17 pm - 5 Replies
- 47 Views
- Last post by ted
Fri May 03, 2013 4:02 pm
- array of point processes
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- using neuron.h.Graph() through python
by adamimos » Thu Feb 11, 2010 8:14 pm - 9 Replies
- 1230 Views
- Last post by patoorio
Fri May 03, 2013 10:46 am
- using neuron.h.Graph() through python
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- Recoding NEURON in Python
by romain.caze » Fri Mar 22, 2013 8:45 am - 3 Replies
- 452 Views
- Last post by ted
Tue Apr 23, 2013 5:01 pm
- Recoding NEURON in Python
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- PyNEURON will not load DLL files
1, 2by bscoventry » Wed Mar 27, 2013 1:51 pm - 15 Replies
- 196 Views
- Last post by hines
Wed Apr 10, 2013 7:07 am
- PyNEURON will not load DLL files
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- Cannot get the syntax correct for creating a gap junction
by maxwellphenderson » Fri Feb 22, 2013 4:54 pm - 10 Replies
- 227 Views
- Last post by ted
Thu Feb 28, 2013 12:01 am
- Cannot get the syntax correct for creating a gap junction
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- NEURON 7.2 + Python + cPickle on Fedora 17- hoc module error
by phendric » Fri Feb 08, 2013 9:08 pm - 3 Replies
- 115 Views
- Last post by hines
Wed Feb 13, 2013 10:14 am
- NEURON 7.2 + Python + cPickle on Fedora 17- hoc module error
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- Issues using NetStim
by maxwellphenderson » Fri Feb 01, 2013 5:11 pm - 3 Replies
- 153 Views
- Last post by ted
Tue Feb 12, 2013 12:14 pm
- Issues using NetStim
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- Recording changes in Impedance in NEURON (Python)
by gary » Thu Jan 24, 2013 1:15 pm - 6 Replies
- 215 Views
- Last post by gary
Tue Jan 29, 2013 6:28 am
- Recording changes in Impedance in NEURON (Python)
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- Impose e_extracellular using PyNeuron problem
by ehagen » Fri Nov 30, 2012 9:55 am - 2 Replies
- 271 Views
- Last post by ehagen
Tue Dec 04, 2012 3:57 am
- Impose e_extracellular using PyNeuron problem
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- Importing NeuroML model spec using python
by foxy1987 » Sat Nov 03, 2012 2:02 pm - 1 Replies
- 170 Views
- Last post by hines
Sun Nov 04, 2012 8:09 am
- Importing NeuroML model spec using python
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- Caveats when using neuron.h.SectionList()?
by ehagen » Tue Oct 02, 2012 10:45 am - 1 Replies
- 231 Views
- Last post by ted
Tue Oct 02, 2012 3:00 pm
- Caveats when using neuron.h.SectionList()?
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- Directly accessing segment of Section() object
by bear » Tue Jul 17, 2012 12:47 pm - 1 Replies
- 290 Views
- Last post by ted
Tue Jul 17, 2012 9:34 pm
- Directly accessing segment of Section() object
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- Model (hoc file), plotting output in Python
1, 2by vladimirov » Thu May 10, 2012 2:55 pm - 15 Replies
- 909 Views
- Last post by mattions
Sun Jul 15, 2012 2:36 pm
- Model (hoc file), plotting output in Python
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- NEURON + Python thread(s) with the hoc interpreter
by giljael75 » Sat May 19, 2012 1:32 pm - 1 Replies
- 304 Views
- Last post by hines
Sun Jul 08, 2012 4:08 pm
- NEURON + Python thread(s) with the hoc interpreter
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- Neuron + Python on Mac OS-X, Enthought Python distribution
by pbmanis » Tue Feb 10, 2009 11:09 pm - 3 Replies
- 1829 Views
- Last post by hines
Sun Jul 08, 2012 10:25 am
- Neuron + Python on Mac OS-X, Enthought Python distribution
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- python & hoc strings
by samnemo » Tue Jun 26, 2012 1:39 pm - 1 Replies
- 304 Views
- Last post by hines
Wed Jun 27, 2012 12:17 am
- python & hoc strings
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- psection and segments
by cwei_h » Mon Jun 11, 2012 3:29 am - 1 Replies
- 260 Views
- Last post by ted
Mon Jun 11, 2012 11:40 am
- psection and segments
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- NEURON+Python hacks
by wwlytton » Sun Jun 03, 2012 4:31 pm - 0 Replies
- 322 Views
- Last post by wwlytton
Sun Jun 03, 2012 4:31 pm
- NEURON+Python hacks
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- reset NEURON
by btorb » Mon Aug 08, 2011 3:03 am - 5 Replies
- 734 Views
- Last post by ramcdougal
Fri Jun 01, 2012 11:19 pm
- reset NEURON
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- PyNEURON simplify NEURON usage from Python on Windows
by uri.cohen » Sat Feb 11, 2012 4:36 am - 12 Replies
- 2637 Views
- Last post by hines
Sun May 20, 2012 2:58 pm
- PyNEURON simplify NEURON usage from Python on Windows
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- Convert python array to neuron vector
by Prokopiou » Thu May 03, 2012 2:45 pm - 4 Replies
- 356 Views
- Last post by hines
Fri May 04, 2012 3:52 pm
- Convert python array to neuron vector
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- Driving synaptic event using vecStim
by mattions » Thu Dec 09, 2010 6:49 pm - 11 Replies
- 1607 Views
- Last post by regger
Wed Apr 25, 2012 11:01 am
- Driving synaptic event using vecStim
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- Installing NEURON using PIP
by Prokopiou » Sun Apr 22, 2012 7:25 pm - 2 Replies
- 290 Views
- Last post by vellamike
Tue Apr 24, 2012 4:50 am
- Installing NEURON using PIP
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- Section creation
by Krishna Chaitanya » Tue Apr 17, 2012 12:46 am - 2 Replies
- 378 Views
- Last post by Krishna Chaitanya
Fri Apr 20, 2012 6:26 am
- Section creation
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- Destroy a vector in order to restart recording
by uri.cohen » Wed Apr 18, 2012 6:10 pm - 3 Replies
- 303 Views
- Last post by ted
Fri Apr 20, 2012 12:01 am
- Destroy a vector in order to restart recording
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- Trouble with python imports
by aluchko » Tue Apr 10, 2012 5:43 pm - 4 Replies
- 551 Views
- Last post by hines
Thu Apr 12, 2012 6:56 am
- Trouble with python imports
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- accessing hoc from python
by stil » Wed Apr 04, 2012 3:27 am - 3 Replies
- 339 Views
- Last post by ted
Wed Apr 04, 2012 9:24 pm
- accessing hoc from python
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- Introducing LFPy, a Python module for simulating LFPs
by ehagen » Thu Mar 22, 2012 9:41 am - 0 Replies
- 379 Views
- Last post by ehagen
Thu Mar 22, 2012 9:41 am
- Introducing LFPy, a Python module for simulating LFPs
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- Finding netcon-s from python
by uri.cohen » Tue Mar 20, 2012 5:43 am - 5 Replies
- 468 Views
- Last post by ted
Wed Mar 21, 2012 9:26 pm
- Finding netcon-s from python
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- Ring shaped network question
by maxwellphenderson » Wed Mar 14, 2012 12:09 pm - 1 Replies
- 255 Views
- Last post by ted
Wed Mar 14, 2012 1:02 pm
- Ring shaped network question
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- passing strdef from python and List.browser
by ramcdougal » Wed Mar 07, 2012 6:39 pm - 1 Replies
- 266 Views
- Last post by ramcdougal
Fri Mar 09, 2012 2:13 pm
- passing strdef from python and List.browser
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- How to access i_cap from Python
by bhalterm » Thu Mar 01, 2012 6:21 pm - 2 Replies
- 276 Views
- Last post by bhalterm
Fri Mar 02, 2012 9:09 am
- How to access i_cap from Python
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- Import MorphML file in Python RuntimeError
by selfdestructo » Wed Feb 15, 2012 7:16 am - 3 Replies
- 363 Views
- Last post by hines
Thu Feb 16, 2012 11:10 am
- Import MorphML file in Python RuntimeError
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- Question about connectivity using pt3dadd
by maxwellphenderson » Wed Jan 18, 2012 11:20 am - 3 Replies
- 485 Views
- Last post by ted
Fri Jan 20, 2012 12:04 pm
- Question about connectivity using pt3dadd
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- Finding available variables in each section
by uri.cohen » Tue Dec 27, 2011 5:30 pm - 4 Replies
- 514 Views
- Last post by figoyouwei
Fri Jan 13, 2012 12:42 pm
- Finding available variables in each section
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- PyNeuron Model View Error while calling the Py Class
by figoyouwei » Wed Dec 14, 2011 7:54 am - 5 Replies
- 835 Views
- Last post by hines
Wed Jan 04, 2012 10:17 pm
- PyNeuron Model View Error while calling the Py Class
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- Saving the integration of Neuron at certain time
by mattions » Wed Nov 23, 2011 1:27 pm - 2 Replies
- 480 Views
- Last post by mattions
Thu Nov 24, 2011 12:05 pm
- Saving the integration of Neuron at certain time
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- Can't import scipy when using nrngui -python
by bhalterm » Wed Nov 02, 2011 4:28 pm - 3 Replies
- 683 Views
- Last post by bhalterm
Thu Nov 03, 2011 9:11 pm
- Can't import scipy when using nrngui -python
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- Getting gui to stay open when importing NEURON
by bhalterm » Wed Nov 02, 2011 4:22 pm - 4 Replies
- 598 Views
- Last post by bhalterm
Thu Nov 03, 2011 8:07 pm
- Getting gui to stay open when importing NEURON
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- import3D question
by maxwellphenderson » Tue Nov 01, 2011 1:32 pm - 1 Replies
- 364 Views
- Last post by ted
Tue Nov 01, 2011 1:56 pm
- import3D question
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- Pyneuron vs hoc
by shyam_u2 » Wed Oct 19, 2011 3:54 am - 5 Replies
- 791 Views
- Last post by hines
Tue Oct 25, 2011 7:06 am
- Pyneuron vs hoc
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- Defining event times in the 'NetCon' object
by lempkas » Wed Oct 19, 2011 12:49 pm - 1 Replies
- 1200 Views
- Last post by ted
Wed Oct 19, 2011 1:59 pm
- Defining event times in the 'NetCon' object
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- Changing custom channel parameters through Python
by BBAmp » Mon Aug 16, 2010 3:20 pm - 10 Replies
- 1395 Views
- Last post by ted
Thu Oct 13, 2011 1:44 pm
- Changing custom channel parameters through Python
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- Python crashes when loading nrnmech.dll
by uri.cohen » Tue Oct 04, 2011 4:43 am - 9 Replies
- 1032 Views
- Last post by hines
Sun Oct 09, 2011 8:48 pm
- Python crashes when loading nrnmech.dll
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