www.neuron.yale.edu

Hi all, I have a model that includes axo-axonic cells that cause pyramidal cells to fire APs in the axon that do not backpropagate to the soma. I want to use the ParallelNetManager's want_all_spikes() because it's easy but it seems to only record spikes at the soma. Is there a simple way to force it...

Hey all,

Would there be any interest in making a HOC kernel so that HOC code can be interpreted in a Jupyter notebook/ the new Jupyter Lab? I'm using it beautifully with NEURON as a Python module but it would be cool to do HOC as well (mainly for teaching). Just thought I'd throw it out there!

Ben

Hey all, We are running a comp. neuroscience workshop using NEURON and I had a participant with a strange issue. Every time he double clicks a .hoc file, he gets this error: http://i64.tinypic.com/259zf5z.jpg However, I can run the code manually i.e. by typing "nrniv script.hoc" in bash an...

Hey all, I've been having a great experience with NetPyNE! Thanks again for developing it. I was wondering, is there a limit to the size of the network one can create in this framework? We are wanting to scale up our models to 10's of thousands of cells with complex connectivity... do you see any bo...

That was it! Thank you so much for your help!

Thanks so much for the help. We tried on Windows, Ubuntu, and Mac to no avail. The cells get created and connected but still "No spikes available to plot raster".

No problem. So we updated to the new Netpyne version (0.7.0) and still the above code generates the message "No spikes available to plot raster". We looked through the source code a bit and it seems like it should work but we haven't had any luck. We will keep digging but any thoughts you ...

Salva, Thanks for the quick reply. I created the artificial cell but cannot seem to get the spikes to show up: from netpyne import specs, sim netParams = specs.NetParams() #Create artificial cell with spike times netParams.popParams['bkg'] = {'cellModel' : 'VecStim', 'numCells': 5, 'spkTimes': [100,...

Hello all, I am using NetPyNe to convert some old hoc code to the standardized Python form which NetPyNe facilitates (great project!). I have a 500 cell model of the rodent central nucleus of the amygdala (Ce) which receives input from other nuclei in the amygdala. We model these inputs separately a...

Thank you for the information! I think what I'm looking for is closer to the second approach. Do you know of any resources for learning about jquery & websockets as they relate to making an interactive web page like you describe?

Hey everyone, Our lab uses some tutorials we developed with NEURON to teach undergraduate neuroscience. We also disseminate these tutorials to other instructors. The tutorials are very popular because they are interactive i.e. they allow students to "block" sodium channels and see the effe...

This is really cool! I'm a PhD student in a lab where we use NEURON to teach neuroscience and we also do robotics outreach. I'm finding the info at the bitbucket site hard to follow.. how would I go about installing the software on a windows machine?

That's incredibly helpful, thank you!

Hello, I'm new to NEURON and Python but I've managed to make a couple of simple models. The problem is when I try to create a new plot from the GUI, the variable I want isn't available. For example, if I click "current axis" to generate a new graph and then right click and select "Plo...