Search found 97 matches
- Sun Sep 24, 2006 10:56 pm
- Forum: Getting started
- Topic: Keep Lines in Space Plot: Only two lines plotted
- Replies: 4
- Views: 7229
- Sat Sep 23, 2006 2:02 am
- Forum: Getting started
- Topic: RangeVarPlot .origin(x) usage?
- Replies: 3
- Views: 4034
right. I am wondering should I pass in .origin an arc length as x (0<=x<=1, say 0.5), or should I pass in length with unit um (e.g. a distance value, say, 0.5*L).
is it or
is it
Code: Select all
dend rvp.origin(0.5)
Code: Select all
dend rvp.origin(0.5*L)
- Fri Sep 22, 2006 6:52 pm
- Forum: Getting started
- Topic: RangeVarPlot .origin(x) usage?
- Replies: 3
- Views: 4034
RangeVarPlot .origin(x) usage?
I read in the reference it says, ... .origin(x) DESCRIPTION x position of the currently accessed section that is treated as the origin (location 0) of the space plot. However in the neurondemo "stylized" model, in control.hoc the usage seems to be sg.original(soma.L) So I am confused about...
- Fri Jul 21, 2006 9:11 pm
- Forum: Getting started
- Topic: soma voltage becomes "nan" during simulation
- Replies: 2
- Views: 3784
Re: soma voltage becomes "nan" during simulation
It was fine the day before. So something changed between then and now. Unless somebody else has access to your machine, you changed it. If you have been keeping track of revisions of your code, it should be fairly easy to go back to the last good version of your program and fix the problem. exactly...
- Wed Jul 19, 2006 1:30 pm
- Forum: Getting started
- Topic: soma voltage becomes "nan" during simulation
- Replies: 2
- Views: 3784
soma voltage becomes "nan" during simulation
Hello, My vector recording membrane voltage gets "nan" values after some point process (synapses) is triggered. Other than the error that the recorded vector has values "nan" from a certain index on, there's no any other error or warning messages. After nrniv finished its runs: o...
- Wed Jul 12, 2006 12:56 am
- Forum: NEURON + Python
- Topic: possible section syntax
- Replies: 10
- Views: 12162
- Wed Jul 12, 2006 12:19 am
- Forum: NEURON + Python
- Topic: request for comments
- Replies: 13
- Views: 19978
- Tue Jul 11, 2006 8:44 pm
- Forum: NEURON + Python
- Topic: Tip of the day
- Replies: 11
- Views: 16087
The server (and host key) may have been changed since the last time that you got your local copy of the repository. You might want to archive the copy you presently have, then try setting up a new one. I tried setting up a new one, but I got to be asked for password. I surely exported CVS_RSH, wier...
- Tue Jul 11, 2006 7:37 pm
- Forum: NEURON + Python
- Topic: request for comments
- Replies: 13
- Views: 19978
Can a python person tell me what syntax could capture s[0<x<1].hh.gnabar = f(x) One possiblity that seems exciting to me is the generalization to parameterized subsets cell[i].distal[all x].hh.gnabar = f(x) I guess I need to learn more python. if cell returns a Section object then it is fine if you...
- Tue Jul 11, 2006 6:05 pm
- Forum: NEURON + Python
- Topic: Tip of the day
- Replies: 11
- Views: 16087
Ah, seems I have to get NEURON with cvs version. however, is cvs anonymous checkout avaiable now? I got the following error: $ cvs -d :ext:anonymous@www.neuron.yale.edu:/home/cvsroot checkout iv Host key verification failed. cvs [checkout aborted]: end of file from server (consult above messages if ...
- Mon Jul 10, 2006 6:58 pm
- Forum: NEURON + Python
- Topic: Tip of the day
- Replies: 11
- Views: 16087
- Sun Jun 11, 2006 11:30 pm
- Forum: Getting started
- Topic: Is this simply a warning or I did something wrong?
- Replies: 11
- Views: 10842
It's hard to be more specific without knowing more about your grand plan (which may be too proprietary for public discussion), but I wonder if it is possible to recast your strategy in a way that doesn't require an iterator at all. Just quoting Ted to point out the problem with answering this quest...
- Sun Jun 11, 2006 3:18 pm
- Forum: Getting started
- Topic: Is this simply a warning or I did something wrong?
- Replies: 11
- Views: 10842
You can reorganize your iterator so that you can bring the break statement outside of the section access block: ... iterates through all the SectionParts, still allowing a break statement. Although this solution works in your example I am wondering whether it is the right solution. Passing break st...
- Sun Jun 11, 2006 2:04 pm
- Forum: Getting started
- Topic: Is this simply a warning or I did something wrong?
- Replies: 11
- Views: 10842
Raj makes a good point. It's hard to be more specific without knowing more about your grand plan (which may be too proprietary for public discussion), but I wonder if it is possible to recast your strategy in a way that doesn't require an iterator at all. The idea is simple. I need to iterate throu...
- Sun Jun 11, 2006 1:59 am
- Forum: Getting started
- Topic: Is this simply a warning or I did something wrong?
- Replies: 11
- Views: 10842
Thanks, the following code replicate the warning message: /* An example trying to replicate the error. */ create soma, dend[1] access soma connect dend[0](0), 1 dend[0] {L=100} //--------------------------------------------------------------------- // SectionPart, representing part of a section. beg...