www.neuron.yale.edu

Hello, I am trying to install the pulse generator from the FAQ (https://tinyurl.com/2p9tb2h2), but have run into the following error: -e /usr/bin/xcrun xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcr...

Hello Ted, Thank you for taking such a close look at the file! I now see how the connectivity between neurites of that file is entirely dysfunctional. For now, I think we will use simple ball and stick models, but input surface area, diameter, and other statistics into NEURON as calculated by our ow...

Hi Ted,

Here is a link to the .swc file:

https://www.dropbox.com/t/LfYIk2WurkLiMYAJ

All of the morphology seems correct besides no soma being loaded when using the Import3d tool.

I appreciate your help with this, thank you!

Hello Ted,

Thank you for your suggestion!

I used the Import3d tool to view a simple neuron (a soma with one dendrite), except the soma did not load. Do you know of any fixes?

If it's any help, I am a MacBook Air user with Python 3.7.9.

Hello Ted,

Neurolucida offers 4 options to save files as:

XML Document File (*.xml)
MBF Binary files (*.dat)
MBF Ascii files (*.asc)
Export Sets to files (*.asc)

Are any of these compatible with NEURON? Apologies if I am not being too specific, all of this is quite new to me.

Hello Ted,

Thank you for your reply! Do you know if NEURON could import morphometric data from XML files? If so, could you link me to a thread (if it exists) in which this was done?

Thank you!

Hey everyone, The lab I work at is considering purchasing neuronal modeling software, either IMARIS or Neurolucida, in order to construct digital models of neurons captured with neurobiotin. We were wondering if either one of these is more compatible than the other for eventual use with NEURON. What...