Reaction-Diffusion Tutorials

You may also be interested in:

• The rxd module in the Programmer’s Reference
• Reaction-Diffusion in the NEURON Forum
• The paper introducing the rxd module
• Tutorial on using Python with NEURON

Contents:

• Reaction-Diffusion
  • Overview
    • Concept
    • Math
    • Specification
      • Where
      • Who
      • How
  • Reading the Data
    • NodeList
    • Node
  • Examples
    • Simple Reaction with Abrupt Change in Reaction Rate
    • Diffusion and Interaction with Ion Channels
    • Scalar Bistable Wave
• Calcium Waves in RxD
  • Overview
    • Concept
  • Specification
    • Basic Structure
    • Time-step Activation
    • Initial Paramters
    • Regions
    • Species
    • Pumps and Channels
    • Rates and Time-step Integration
    • Running the Program
    • Sample Output