NEURON Hands-on Course

EXERCISES

Table of Contents

1. Lipid Bilayer

3

2. Hodgkin - Huxley axon

5

3. Ball - Stick model

7

4. HOC exercises

19

5. Model Control : Arbitrary forcing functions

29

6. Model Control : Simulation Families

33

7. Linear Circuits 1 : Two electrode voltage clamp

39

8. NMODL : HH type channels

45

9. NMODL : Kinetic Scheme : potassium channel

47

10. Using ModelDB

61

11. NMODL : Kinetic Scheme : calcium pump

67

12. NMODL : Parameter Discontinuities : pulse stimulus

71

13. Networks : discrete event simulations with artificial cells

75

14. Networks : continuous and hybrid simulations with cells from the CellBuilder

79

15. Hopfield Brody synchronization (sync) model

83

16. Custom initialization

91

17. Working with morphometric data

95

18. Analyzing electrotonus

103



Informal extras

Some useful hoc idioms

111

Vector/Matrix : Reading data

113

Vector/Matrix : Subtracting linear response

115

MyFirstNEURON by Arthur Houweling

(remote)

Linear Circuits 2: Rectifying gap junction

117


NEURON hands-on course
Copyright © 1998-2008 by N.T. Carnevale and M.L. Hines, all rights reserved.