z/bfilt

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rev 405: (0) -300 -100 -60 tip
age author description
6 months seancarver Adding Documentationdefault tip
6 months seancarver New function khhch3Q, written in August
8 months Michael Hines fix up for YFitnessNRun so 'nrngui init.py hhss.ses' works.
8 months seancarver Fixed bugs; plot takes bigger nums
8 months sean Added temp.py
9 months seancarver funnel plots updated
9 months seancarver Vchar bug in hmRun fixed
9 months sean Added conVs to hmRun.py
9 months seancarver Committing merge
9 months seancarver Started coding hmAbsorb, added Vchars to structure, fixed bug with Vchar
9 months sean Minor changes
10 months seancarver Fixed bug fitting 5 channels to 1 channel data
10 months sean Added some more runs to hmRun.py
10 months sean Committing version used for plots
10 months seancarver About to run extendy
10 months seancarver HR version of conSeed2 ready to run
10 months seancarver Now ready to run conSeed2 finally
10 months seancarver Ready to run conSeed2()
10 months seancarver Now ready to start likelihood plot
10 months seancarver hmExperiment.fit.simplot now works
10 months seancarver Some bug fixes
10 months seancarver Got hm.Experiment.fit() and .find() working
10 months seancarver Merged
10 months seancarver Committing changes before merge
10 months seancarver Committing some changes before merging with old clyde changes
10 months sean Trying to get hg to work
10 months sean merged changes
10 months sean Old changes not merged
10 months seancarver Trying to put everything together, in progress
10 months seancarver Got likelihood working on hmm.hmchain
10 months seancarver Added hmtest.py
10 months seancarver Coded likelihood but haven't debugged
10 months seancarver Changed to allow protocols with more than one step (so far just simulation)
11 months sean More work on hmExperiment
11 months sean Now have draft -- with hooks for evalD in hmExperiment
11 months sean Got Vchar01,12 and Vhalf01,,12 running correctly
11 months sean working on Vhalf Vslope
11 months sean Added Vslope and Vhalf to hmm.py
11 months sean Lots of work on hmExperiment
11 months sean hmExperiment overloads programmed
11 months sean Allowing different voltage protocols
11 months sean Now hmm hmreps simulates and computes likelihood with multiple trajectories
11 months sean More typos
11 months sean typo fixed
11 months sean hmreps now saves mles
11 months sean typos fixed
11 months sean ch3 cost function for optimization now takes abs of taus
11 months sean Typo fixed. Added saving gtol to reps.py
11 months sean Added saving gtol to reps.py
11 months sean Added hmreps.py
11 months sean Now plots p-Values and confidence regions with confidence lables
11 months sean hmlike now computes Hessian
11 months sean Added hmlike + avoided eig computation when obvious
11 months sean Q-matrix issue fixed
11 months sean still debugging Q matrix issue
12 months sean hmLikeFig.py added
12 months sean hmm now fits with parms different from sim, works with Ensemble
12 months sean Separating simData from fitData in hmm.py
12 months sean Added default parameter values to hmm.ch3hmm()
12 months sean Programmed intitial guess into testcr.py
rev 405: (0) -300 -100 -60 tip