Bibliography:

Amitai, Y., Friedman, A., Connors, B.W., and Gutnick. M.J. Regenerative activity in apical dendrites of pyramidal cells in neocortex. In: Cerebral Cortex 3:26-38, 1993. *

Adorj\'{a}n P., Aradi I., Barna G., \'{E}rdi P., Gr\H{o}bler T.: Modeling Mitral and Granule Cells of the Olfactory Bulb with the NEURON Software Tool. {\it Neurobiology}, {\bf 3}(3), 1995. (Abs.)\\

Aradi I. and P. \'Erdi: Simulation of the whole olfactory bulb based on detailed single cell models. {\it Neurobiology}, (Abs.)(in press)

Aradi I., \'{E}rdi P.: Signal Generation and Propagation in the Olfactory Bulb: Multicompartmental Modeling. {Computers \& Mathematics with Application}, (accepted)\\

\'{E}rdi P., Aradi I., Gr\H{o}bler T.: Rhythmogenesis in Single Cells and Population Models: Olfactory Bulb and Hippocampus. {\it BioSystems}, (accepted)\\

Aradi I., \'Erdi P.: Multicompartmental Modeling of the Olfactory Bulb. {\it Cybernetics and Systems: An Int. J.}, (in press) \\

Aradi I., \'Erdi P.: Multicompartmental Modeling of Neural Circuits in the Olfactory Bulb. {\it Int. J. of Neural Systems}, (submitted).\\

Bekkers, J.M. and Stevens, C.F. Cable properties of cultured hippocampal neurons determined from sucrose-evoked miniature EPSCs. J. Neurophysiol. 75: 1250-1255, 1996.

Bell, A., Mainen, Z. F., Tsodyks, M., and Sejnowski, T. J. (1994). Balancing of conductances may explain irregularity of cortical spiking. In {\em Proc. Joint Symposium on Neural Computation: {UCSD} and {C}altech}, number {INC}-9502, pages 1--5, La Jolla, CA. Inst. for Neural Computation.

Bell, A., Mainen, Z. F., and Sejnowski, T. J. (1995). `{B}alancing of conductances' may explain irregularity of cortical spiking. Technical Report 9502, Institute for Neural Computation, La Jolla, CA.

Bernander, . Koch, C., and Douglas, R.J. Network activity determines spatio-temporal integration in single cells. (Reference?).

Bernander, ., Douglas, R.J., Martin, K.A.C., and Koch, C. Synaptic background activity influences spatiotemporal integration in single pyramidal cells. In: Proc. Natl. Acad. Sci. USA 88:11569-11573, 1991.

Blair, H.T. (1996). A Thalamocortical Circuit for Computing Directional Heading in the Rat. In Touretzky, D.S., Mozer, M.C., and Hasselmo, M.E. (Eds.), _Advances in Neural Information Processing 8_, Cambridge, MA: MIT Press.

Brown, T.H., Mainen, Z.F., Zador, A.M., and Claiborne, B.J. Self-organization of hebbian synapses in hippocampal neurons. In: Advances in Neural Information Processing Systems, eds. Lippmann, R.P., Moody, J.E., and Touretzky, D.J., San Mateo, CA, Mor gan Kaufmann, pp. 39-45, 1991a.

Brown, T.H., Zador, A.M., Mainen, Z.F., and Claiborne, B.J. Hebbian computations in hippocampal dendrites and spines. In: Single Neuron Computation, eds. McKenna, T., Davis, J., and Zornetzer, S.F., Academic Press, pp. 81-116, 1992.

Brown, T.H., Zador, A.M., Mainen, Z.F., and Claiborne, B.J. Hebbian modifications in hippocampal neurons. In: Long-term potentiation: A debate of current issues, eds. Davis, J. and Baudry, M., MIT Press, pp. 357-389, 1991b.

Bush, P.C. and Sejnowski, T.J. Reduced compartmental models of neocortical pyramidal cells. In: J. Neurosci. Mthd. 46:159-166, 1993. *

Carnevale, NT, Tsai, KY, Claiborne, BJ, and Brown, TH Qualitative electrotonic comparison of three classes of hippocampal neurons in the rat. In: The Neurobiology of Computation: Proceedings of the Annual Computational Neuroscience Meeting 1994 J.M. Bower (ed.) Kluwer Academic Publishers, Boston, MA, 1995 pp. 67-72

Carnevale, NT, Tsai, KY, Claiborne, BJ, and Brown, TH The electrotonic transformation: a tool for relating neuronal form to function. In: Advances in Neural Information Processing Systems 7 G. Tesauro, DS Touretzky, TK Leen (eds.) MIT Press, Cambridge, MA, 1995 pp. 69-76

Carnevale NT, Tsai KY, Claiborne BJ, et al. Comparative electrotonic analysis of three classes of rat hippocampal neurons. J NEUROPHYSIOL 78: (2) 703-720 AUG 1997

Cauller L.J. and Connors B.W. (1992) Synapses on very distal dendrites: Functions of layer I inputs to layer V pyramidal neuron in neocortex. In: Single Neuron Computation, T. McKenna, J. Davis and S.F. Zornetzer (eds.) Academic Press, San Diego.

Chimento, T.C., Doshay, D.G., and Ross, M.D.. Compartmental modeling of rat macular primary afferents from three-dimensional reconstructions of transmission electron micrographs of serial sections. J. Neurophysiol. 71:1883-1896, 1994.

Claiborne, B.J., Zador, A.M., Mainen, Z.F., and Brown, T.H. Computational models of hippocampal neurons. In: Single Neuron Computation, eds. McKenna, T., Davis, J., and Zornetzer, S.F., Academic Press, pp. 61-79, 1992.

Contreras, D., Destexhe, A., and Steriade, M. Intracellular and computational characterization of the intracortical inhibitory control of synchronized thalamic inputs in vivo. J. Neurophysiol. 78:335-350, 1997.

Alain Destexhe, Mike Neubig, Daniel Ulrich, and John Huguenard Dendritic Low-Threshold Calcium Currents in Thalamic Relay Cells J. Neurosci, May 15, 1998, 18(10):3574-3588 "Simulation programs relative to the above article can be downloaded from the file ftp://ftp.neuron.yale.edu/neuron/papers/alain/dendtc.zip or by visiting http://cns.fmed.ulaval.ca

Destexhe papers are also available here

Destexhe, A., and Babloyantz, A. A model of the inward current Ih and its possible role in thalamocortical oscillations. NeuroReport 4:223-226, 1993.

Destexhe, A., Babloyantz, A. and Sejnowski, T.J. Ionic mechanisms for intrinsic slow oscillations in thalamic relay neurons. Biophysical Journal 65: 1538-1552, 1993a.

Destexhe, A., T. Bal, D.A. McCormick, and T.J. Sejnowski. Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. J. Neurophysiol 76: 2049-2070, 1996.

Destexhe, A., Contreras, D., and Steriade, M. Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J. Neurophysiol. 79:999-1016, 1988.

Destexhe, A., McCormick, D.A. and Sejnowski, T.J. A model for 8-10 spindling in interconnected thalamic relay and reticularis neurons. Biophysical Journal 65: 2474-2478, 1993b.

Destexhe, A., Contreras, D., Sejnowski, T.J. and Steriade, M. A model of spindle rhythmicity in the isolated thalamic reticular nucleus. J. Neurophysiology 72: 803-818, 1994a.

Destexhe, A., Contreras, D., Sejnowski, T.J. and Steriade, M. Modeling the control of reticular thalamic oscillations by neuromodulators. NeuroReport 5: 2217-2220, 1994b.

Destexhe, A., Mainen, Z. and Sejnowski, T.J. An Efficient Method for Computing Synaptic Conductances Based on a Kinetic Model of Receptor Binding. Neural Computation 6: 14-18, 1994c.

Destexhe, A., Mainen, Z. and Sejnowski, T.J. Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J. Computational Neuroscience 1: 195-231, 1994d.

Destexhe, A. and Sejnowski, T.J. G-protein activation kinetics and spill-over of GABA may account for differences between inhibitory responses in the hippocampus and thalamus. Proc. Natl. Acad. Sci. USA 92: 9515-9519, 1995.

Destexhe, A., Contreras, D., Steriade, M., Sejnowski, T.J., and Huguenard, J.R. In vivo, in vitro and computational analysis of dendritic calcium currents in thalamic reticular neurons. J. Neuroscience 16: 169-185, 1996a.

Destexhe, A., Mainen, Z. F., and Sejnowski, T. J. (1995b). Synaptic currents, neuromodulation and kinetic models. In Arbib, M., editor, {\em The Handbook of Brain Theory and Neural Networks}, pages 956-959. MIT Press, Cambridge, MA.

Destexhe, A., Mainen, Z. and Sejnowski, T.J. Fast kinetic models for simulating AMPA, NMDA, GABA and GABA receptors. In: The Neurobiology of Computation, Edited by Bower, J., Kluwer Academic Publishers, Boston MA, pp. 9-14, 1995.

Destexhe, A., Contreras, D., Steriade, M., Sejnowski, T.J. and Huguenard, J. Computational models constrained by voltage-clamp data for investigating dendritic currents. In: Computation and Neural Systems, Edited by Bower, J., Kluwer Academic Publishers, Boston MA, in press, 1996.

Destexhe, A. and Sejnowski, T.J. Synchronized oscillations in thalamic networks: insights from modeling studies. In: Thalamus, Edited by Steriade, M., Jones, E.G, and McCormick, D.A., Elsevier, Amsterdam, in press, 1996.

Destexhe, A., Mainen, M. and Sejnowski, T.J. Kinetic models of synaptic currents. In: Methods in Neuronal Modeling (2nd edition), Edited by Koch, C. and Segev, I. MIT Press, Cambridge, MA, in press, 1996.

Destexhe A. Conductance-based integrate-and-fire models. Neural Comput 1997 Apr 1;9(3):503-514.

Fisher, SA, Jaffe, DB, Claiborne, BJ, and Brown, TH (1993). Self-organization of Hebbian synapses on a biophysical model of a hippocampal neuron. Soc Neurosci Abstr, 19:808.

Fleidervish,I.A., Friedman,A., and Gutnick,M.J. Slow inactivation of Na+ current and slow cumulative spike adaptation in mouse and guinea-pig neocortical neurones in slices. J.Physiol.493:83-97.

Fohlmeister, J.F. and Miller, R.F. Mechanisms by which cell geometry controls repetitive impulse firing in retinal ganglion cells. J. Neurophysiol. 78:1948-1964, 1997.

Geiger, J.R.P., Lübke, J., Roth, A., Frotscher, M. and Jonas, P. (1997). Submillisecond AMPA receptor-mediated signaling at a principal neuron-interneuron synapse. Neuron 18, 1009-1023.

Häusser, M. and Roth, A. (1997). Estimating the time course of the excitatory synaptic conductance in neocortical pyramidal cells using a novel voltage jump method. J. Neurosci. 17, 7606-7625.

Hausser, M., Stuart, G., Racca, C. and Sakmann, B. (1995). Axonal initiation and active dendritic propagation of action potentials in substantia nigra neurons. Neuron 15, 637-647.

D.A.Henze, W.E. Cameron, and G.Barrionuevo. 1996. Dendritic morphology and its effects on the amplitude and rise-time of synaptic signals in hippocampal CA3 pyramidal cells. Journal of comparative neurology. 369:331-344.

Hines, Michael and Peter Shrager (1991). A computational test of the requirements for conduction in demyelinated axons. J. Restorative Neurology and Neuroscience. 3 81--93.

Hoffman DA. Magee JC. Colbert CM. Johnston D. K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature. 387(6636):869-75, 1997 Jun 26.

Holt GR, Koch C. Shunting inhibition does not have a divisive effect on firing rates. NEURAL COMPUT 9: (5) 1001-1013 JUL 1 1997

Huguenard, J., Joerges, J., Mainen, Z. F., and Sejnowski, T. J. (1994). Functional role of axon hillock and initial segment in cortical spike initiation. {\em Soc. Neurosci. Abstr.}, 20:1527.

Hsu, H., Huang, E., Yang, X.-C., Karschin, A., Labarca, C., Figl, A., Ho, B., Davidson, N. and Lester, H. A. (1993) Slow and incomplete inactivations of voltage-gated channels dominate encoding in synthetic neurons. Biophys. J. 65, 1196-1206.

Jackson ME, Cauller LJ. Evaluation of simplified compartmental models of reconstructed neocortical neurons for use in large-scale simulations of biological neural networks. BRAIN RES BULL 44: (1) 7-17 1997

Jaffe, DB, Fisher, SA, & Brown, TH (1994). Confocal laser scanning microscopy reveals voltage-gated calcium signals within hippocampal dendritic spines. J Neurobio, 25:220-233.

Jaffe, D.B., Ross, W.N., Lisman, J.E., Miyakawa, H., Lasser-Ross, N., and Johnston, D. A model of dendritic Ca2+ accumulation in hippocampal pyramidal neurons based on fluorescence imaging experiments. J. Neurophys., 71:1065--1077, 1994.

Kairiss, E. W., Mainen, Z. F., Claiborne, B. J., and Brown, T. H. (1992). Dendritic control of hebbian computations. In Eeckman, F., editor, {\em Analysis and Modeling of Neural Systems}. Kluwer Academic, Boston, MA.

Kapur A, Lytton WW, Ketchum KL, and Haberly, L.B. Regulation of the NMDA component of EPSPs by different components of posynaptic GABAergic inhibition: Computer simulation analysis in piriform cortex. J NEUROPHYSIOL 78: (5) 2546-2559 NOV 1997

Kim, H.G. and Connors, B.W. Apical dendrites of the neocortex: Correlation between sodium- and calcium-dependent spiking and pyramidal cell morphology. In: J. Neurosci. 13(12):5301-5311, 1993.

Lindgren, C. A. and Moore, J. W. (1989). Identification of ionic currents at presynaptic nerve endings of the lizard. J. Physiol 414: 210-222. *

Lipowsky, R., Gillessen, T. and Alzheimer, C. Dendritic Na+ channels amplify EPSPs in hippocampal CA1 pyramidal cells. JNP 76:2181-2191, 1996.

Lytton, W.W. and Sejnowski, T.J. Computer model of ethosuximide's effect on a thalamic neuron. In: Ann. Neurol. 32(2):131-139, 1992. *

Lytton, W.W. and Sejnowski, T.J. Simulations of cortical pyramidal neurons synchronized by inhibitory interneurons. In: J. Neurophys. 66(3):1059-1079, 1991.*

Lytton, W.W. and Wathey, J.C. Realistic single-neuron modeling. In: Sem. Neurosci. 4:15-25, 1992.

Lytton, W.W. Simulations of a phase comparing neuron of the electric fish Eigenmannia. In: J. Comp. Physiol A. 169:117-125, 1991. *

Lytton, W.W., Contreras, D., Destexhe, A., and Steriade, M. Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures. J. Neurophysiol. 77:1679-1696, 1977.

Lytton WW; Destexhe A; Sejnowski, TJ. Control of slow oscillations in the thalamocortical neuron: a computer model, {\em Neuroscience}, 70:673--684 1996.

Lytton WW. Optimizing synaptic conductance calculation for network simulations. {\em Neural Computation}, 8:501--510, 1996

Mainen, Z. F., Zador, A. M., Claiborne, B. J., and Brown, T. H. (1990). Hebbian synapses induce feature mosaics in hippocampal dendrites. {\em Soc. Neurosci. Abstr.}, 16:492.

Mainen, Z. F., Claiborne, B. J., and Brown, T. H. (1991). A novel role for synaptic competition in the development of cortical lamination. {\em Soc. Neurosci. Abstr.}, 17:759.

Mainen, Z. F. and Sejnowski, T. J. (1994a). Reliability of spike encoding in neocortical neurons. In {\em Proc. Joint Symposium on Neural Computation: {UCSD} and {C}altech}, number {INC}-9502, pages 24--29, La Jolla, CA. Inst. for Neural Computation.

Mainen, Z. F. and Sejnowski, T. J. (1994b). Reliability of spike initiation in neocortex. {\em Soc. Neurosci. Abstr.}, 20:1527.

Mainen, Z. F. and Sejnowski, T. J. (1995). Reliability of spike timing in neocortical neurons. {\em Science}, 268:1503-1506.

Mainen, Z. F., Joerges, J., Huguenard, J., and Sejnowski, T. J. (1995). A model of spike initiation in neocortical pyramidal neurons. {\em Neuron}, 15:1427-1439.

Manor, Y., Rinzel, J., Segev, I., and Yarom, Y. Low-amplitude oscillations in the inferior olive: a model based on electrical coupling of neurons with heterogeneous channel densities. J. Neurophys. 77:2736-2752, 1997.

Marsalek, P., Koch, C., and Maunsell, J. On the relationship between synaptic input and spike output jitter in individual neurons. PNAS 94:735-740, 1997.

Mel, B.W. NMDA-based pattern discrimination in a modeled cortical neuron. In: Neural Comp. 4:502-517, 1992.

Markram, H., Lübke, J., Frotscher, M., Roth, A. and Sakmann, B. (1997). Physiology and anatomy of synaptic connections between thick tufted pyramidal neurones in the developing rat neocortex. J. Physiol. 500, 409-440.

Migliore, M. Modeling the attenuation and failure of action potentials in the dendrites of hippocampal neurons. Biophys. J. 71:2394-2403, 1996.

Migliore, M., Cook, E.P., Jaffe, D.B., Turner, D.A., and Johnston, D. Computer simulations of morphometrically reconstructed CA3 hippocampal neurons {\em J. Neurophys.}, 73:1157--1168, 1995.

Miralles, Francesc and Carles Solsona. "Activity-dependent modulation of the presynaptic potassium current in the frog neuromuscular junction". Journal of Physiology, 1996; 495.3:717-732.

Moore, J. W. and Hines, Michael. (1986). Some consequences of intracellular calcium binding on phasic synaptic transmitter release. In: Calcium, Neuronal Function, and Transmitter Release. pp. 115--140. R. Rahamimoff and B. Katz (eds.), Martinus Nijhoff. *

O'Boyle, MP, Carnevale, NT, Claiborne, BJ, and Brown, TH A new graphical approach for visualizing the relationship between anatomical and electrotonic structure. In: The Neurobiology of Computation: Proceedings of the Annual Computational Neuroscience Meeting 1995 J.M. Bower (ed.) in press

Rapp, M., Yarom, Y. and Segev, I.. Modeling back propagating action potential in weakly excitable dendrites of neocortical pyramidal cells. PNAS 93:11985-11990, 1996.

Reuveni,I., Friedman,A., Amitai,Y., and Gutnick,M.J. Setepwise repolarization from Ca2+ plateaus in neocortical pyramidal cells: Evidence for nonhomogeneous distribution of HVA Ca2+ channels in dendrites. J.Neurosci. 13:4609-4621, 1993.

Ross, M.D., Chimento,T., Doshay, D., and Cheng, R. Computer-assisted three- dimensional reconstruction and simulations of vestibular macular neural connectivities. In: Ann. N. Y. Acad. Sci. 656:75-91, 1992.

Rusakov, D.A., Stewart, M.G., and Korogod, S.M. Branching of active dendritic spines as a mechanism for controlling synaptic efficacy. Neuroscience. 75:315-323, 1996.

Sah, P. and Bekkers, J.M. Apical Dendritic Location of Slow Afterhyperpolarization Current in Hippocampal Pyramidal Neurons: Implications for the Integration of Long-Term Potentiation Journal of Neuroscience Volume 16, Number 15, Issue of August 1, 1996 pp. 4537-4542

Sanchez, R.M. et al. Voltage-clamp analysis and computer simulation of a novel cesium-resistant A-current in guinea pig laterodorsal tegmental neurons. J. Neurophysiol. 79:3111-3126, 1998

Segev,I., Friedman,A., White,E.L., and Gutnick, M.J. Electrical consequences of spine dimensions in a model of a cortical spiny stellate cell completely reconstructed from serial thin sections. J.Comp.Neurosci. 2:117-130, 1995.

Sharp PE. Blair HT. Brown M. Neural network modeling of the hippocampal formation spatial signals and their possible role in navigation: a modular approach. Hippocampus. 6(6):720-34, 1996

Softky, W. Sub-millisecond coincidence detection in active dendritic trees. Neuroscience Vol. 58, No. 1, pp. 13-41, 1994.

Softky, W.R. and Koch, C. Cortical cells should fire regularly, but do not. In: Neural Comp. 4:643-646, 1992.

Softky, W.R. and Koch, C. The highly irregular firing of cortical cells is inconsistent with temporal integration of random EPSPs. In: J. Neurosci. 13(1):334-350, 1993.

Sohal, V.S., Cox, C.L., and Huguenard, J.R. Localization of CCK receptors in thalamic reticular neurons: a modeling study. J. Neurophysiol. 79:2827-2831, 1998

Spruston, N., Jaffe, D.B., and Johnston, D., Dendritic attenuation of synaptic potentials and currents: the role of passive membrane properties. Trends. Neursci. 17:161--166, 1994.

Spruston, N., Jaffe, D.B., Williams, S.H., and Johnston, D., of age- and Space-clamp errors associated with the measurement electrotonically remote synaptic events. J. Neurophys. 70:781--802, 1993.

Stasheff, S.F., Hines, M., and Wilson, W.A. Axon terminal hyperexcitability associated with epileptogenesis in vitro: I. Origin of ectopic spikes. J. Neurophysiol. 70(3):961- 975, 1993.

Stuart, G., and Spruston, N. Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J. Neurosci. 18:3501-3510, 1998

Tang AC. Bartels AM. Sejnowski TJ. Effects of cholinergic modulation on responses of neocortical neurons to fluctuating input. Cereb Cortex 7(6):502-9, 1997 Sep.

Thurbon, D., Luescher, H-R., Hofstetter, T., and Redman, S.J. Passive electrical properties of ventral horn neurons in rat spinal cord slices. J. Neurophysiol. 79:2485-2502, 1998

Traynelis, S.F., Silver, R.A., and Cull-Candy, S.G. Estimated conductance of glutamate receptor channels activated during epscs at the cerebellar mossy fiber-granule cell synapse. Neuron 11:279-289, 1993.

Tsai, KY, Carnevale, NT, Claiborne, BJ, and Brown, TH Efficient mapping from neuroanatomical to electrotonic space. Network 5:21-46, 1994

Tsai, KY, Carnevale, NT, and Brown, TH Hebbian learning is jointly controlled by electrotonic and input structure. Network 5:1-19, 1994

Tsodyks, M., Bell, A., Mainen, Z. F., and Sejnowski, T. J. (1994). Why do cortical neurons spike irregularly? {\em Soc. Neurosci. Abstr.}, 20:1527.

Tsuchitani C. Input from the medial nucleus of trapezoid body to an interaural level detector. HEARING RES 105: (1-2) 211-224 MAR 1997

Ullman, S., Roth, A., Thomson, A. and Linne, M.-L. (1997). Crete, channels, cells, circuits and computers. Trends Neurosci. 20, 53-54.

Velte, T. J. and Miller, R. F. (1996). Computer Simulations of Voltage Clamping Retinal Ganglion Cells Through Whole-Cell Electrodes in the Soma. {\em J. Neurophysiol. 75:} 2129--2143.

Wathey JC; Lytton WW; Jester JM; Sejnowski TJ. Computer simulations of EPSP-to-spike (E-S) potentiation in hippocampal CA1 pyramidal cells. {\em J Neuroscience}, 12: 607--618,1992.

Wang, Hong-Sheng and David McKinnon. (1995). Potassium currents in rat prevertebral and paravertebral sympathetic neurones: control of firing properties. J. Physiol. 485: 319--335.

Wolf, E., Birinyi, A., and Szekely, G. Simulation of the effect of synapses: the significance of the dendritic diameter in impulse propagation. In: European J. Neurosci. 4:1013-1021, 1992. *

Zacksenhouse, M. et al. Single-neuron modeling of LSO unit responses. J. Neurophysiol. 79:3098-3110, 1998